| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_1168 |
|---|
| Symbol | |
|---|
| ID | 7112297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 1282120 |
|---|
| End bp | 1283682 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643479435 |
|---|
| Product | TIR protein |
|---|
| Protein accession | YP_002376487 |
|---|
| Protein GI | 218438158 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA ATTCCCATCC TCTCCCTAGT CAACGAGTTT TTATCAGTTA TCGCAGTCAA
GATCCGGATG CGAGTCTAGC TAAAGTTTTT TATGAACATC TCAAAGATGC CGGACATTTG
CCCTTTATGG CAGCAGAAAG CATCCGTTTG GGAGAAAATT GGCCGGAAGG AGTGGATAAA
GAACTTGAGA AGTCTGATTA TTTTCTTCTG TTACTTTCGG AAAAGTCTGC TACCAGTGAA
ATGGTAATAG AAGAAGTGTC TTCCGCTAAA CGATTACAAG GGCGCAACTC AAATAATAAA
CCCATTATTG TCCCTATTCG GGTTAATTTT CCCTTCTCAG CACCTTTAAG TTATGATTTA
CGAGCATATA CAGCACGCAT TCAGCAAGAA AAATGGAACT CTGACACAGA TACTCCTATA
ATTTTAGCAA AAGTTCTTAG TTTACTGGCT AATAATGAGA CTCCCGCAAC GGTTGAACCA
GAAACTACCT TAACTTATGC AGTAGAAACT TATGATAAGC CTCCTCTGCC GGCTGCTGAG
TTAGAATTAC CGGAGGGAAT GATACGGTTA GCTTCTCCCT TTTATGTGCA ACCAAAATCT
TGCAAGTCTA AATGTGATCA AGAAATTGAA AAACCTGGGG CACTCATCCG CATTAAAGCA
CCCCGACAAA TGGGAAAAAC CTCTCTGTTA GCAAGAATTA GTTATTATGG AAAACAACAA
GGTTATCAAA CAGTTTCTTT AGATTTTAGT CAATTTGAAG AAAATATTTT TCAGGATCTC
AAGCAATTTT TAAAGCGGTT TTGTGCTTCG GTTGCTCGTC AACTCAAAAT ATCTCAGGAA
AAGGTTAAAG AGCATTTAGA TAATGATTCC TATGGACCAA TAGAGAACTG TTGTCAGTTT
TTTGAAGACG TTATTTTCAA AGATCTGACA GTTCCTTTAA TTTTAGGATT AGATAAAATT
GATCTGATTT TTCCTTACTC CGATACAGCA AAAGAATTTC TTAAAATTTT AAGACTTTGG
CATCAAAACG CAATAGATAA AAATGCCTGG AAAAAATTAC GATTAATTAT TGTTCATTCT
ACCGAGTCTT ATGTAAAAAT GGATATTAAT CATTCTCCGT TTAATGTGGG ATTGGGTGTA
AAATTGCCAG AGTTTACCTC AGCACAAGTG TTAGAGTTGG CACAACGTCA CGGACTTGAC
TGGAATAATG GTGAAGTACA ACAGTTAATG GGGATGGTAG GAGGACATCC TTATTTAATT
AGATTAGGGT TATATAATAT TGCTCAACAA GGTATTACTC TGAGTCAGTT ATTACAAAAA
GCACCAACAG ACGAGGGAAT TTATGGGGAA CATCTCCGCC GTCATTTATG GAATTTACAA
CAACATCCAG AATTATTAAA TGCTTTTCAA CAGGTGATCA ACTCACCTCA ATCTATAAAT
TTAGAAACAA GGGAAAAGTT TAAATTAAAT GGGATGGGAT TAGTTGATTT AGAAGATAAT
AAAGTAAAAT TACGTTATGA GCAATTGTAT CGCCCTTATT TTCGTGATTG TTTAAACCTG
TAG
|
|---|
| Protein sequence | MTENSHPLPS QRVFISYRSQ DPDASLAKVF YEHLKDAGHL PFMAAESIRL GENWPEGVDK
ELEKSDYFLL LLSEKSATSE MVIEEVSSAK RLQGRNSNNK PIIVPIRVNF PFSAPLSYDL
RAYTARIQQE KWNSDTDTPI ILAKVLSLLA NNETPATVEP ETTLTYAVET YDKPPLPAAE
LELPEGMIRL ASPFYVQPKS CKSKCDQEIE KPGALIRIKA PRQMGKTSLL ARISYYGKQQ
GYQTVSLDFS QFEENIFQDL KQFLKRFCAS VARQLKISQE KVKEHLDNDS YGPIENCCQF
FEDVIFKDLT VPLILGLDKI DLIFPYSDTA KEFLKILRLW HQNAIDKNAW KKLRLIIVHS
TESYVKMDIN HSPFNVGLGV KLPEFTSAQV LELAQRHGLD WNNGEVQQLM GMVGGHPYLI
RLGLYNIAQQ GITLSQLLQK APTDEGIYGE HLRRHLWNLQ QHPELLNAFQ QVINSPQSIN
LETREKFKLN GMGLVDLEDN KVKLRYEQLY RPYFRDCLNL
|
|---|
| |