| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_0709 |
|---|
| Symbol | |
|---|
| ID | 7110835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 779171 |
|---|
| End bp | 781765 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 643478977 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002376033 |
|---|
| Protein GI | 218437704 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.635546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTATC AAAAATTTAT AGAACAGCTT CCCCAAATTT ATGACAACTG GGGAGAAAAT
AATATGTCTC CAAAAATAAA AGAGTTTTTG GAGATTGAAC AGCAAATAGA AGGAGAAATT
AAGGCTAATT TAATGGCACT TTTAAATTTA GCCGTCGCTA ACCTAACTCC CGATGAAATC
TATTGTCAAA TTGGAGGAAT TTTTCAAGGG AAAAGTTTGA TAGGTGCTTT ATTAGATCAT
CCTGAAAAGG AAGCGTATGC AGTTGAAATA CTGGAGGGAG AAGAAGAGGA TAATCTGTCC
GAGTTAATCG ATAATTTAGT TAGGTATAAA AGAGAAAATC AGGTTTCTTT TTGTTCTTCA
TCTTCCCTTG AAGACGTTTT TTTAGAGTTA AGGGAATTAG AAACAGACAG TAAAATAGGT
GTTGTTTTTT ATCAGAGTAA ATCAGACTAT CGCTCTCAAT TATTAAGTTT ACTTTTAGTC
AAAGAATTTT TAGCGGAACA GGCGTTAATT ATTATTTATA ATAGCAATTA TAGCATGGTT
CAACAAGCTT GCTGTGATTT TTTACTCACT CATCCTCAGA GTCAACTGTT GTTAGACTTA
TCGACTCCTA ATGCAATTCA TTATACATGG GGGAATGGAG TTTATCTAAT AGCATGGGAG
CAACAACAGG ATCAAAGTTT TGATGAGCAA CTTTTCAAGC AAGACTTATT GAATCAACCG
GTTATTCAAG CTATTTCAGA TTTACATGAT CATTTTGAGT TTAAAGCAAA ACCCCAAGCT
ATAAACTTGT TAGTCCATCA AGCTAGGAAT TTATCTATTA CACAAGGCGC AATTGAAAAA
TACAGAGAAG CTTTAACTTG GAATCCTTAT AATCCTGACA TTTATTATGA GTTAGGAGTC
ATTTATTATC AACAAAGGGA ATTAGAAGAA GCTAGTCAAT TGCTCAAAAA AGCCATAGAA
CTCGATTTTT TAAAATCCCA GTATCATTAT CTTTTAGGGA TAATCTATTT TGAACAAGAA
CAATGGGAAG AAGCGATTAA TGTTTATAAA AGAGCAATCG AAGCTTTTCC TAAGCAGGAC
AAAGAATATC TGAAAATTTA TTCTATGTTA ATCCGAATTT TAGGATTAAT CGACCAAAGA
GAAAAAGCCA TTAAAGTTGT TGAACAAGGC ATAAAAGATT TACCCAATGA GATTTTATTA
AAGTTAGAAA ATATCAATAT TTTACCTTAT ATTTATGAAA ATGAAGAGGA AATCAACGTT
TATCGCCAGC GATTTACTCA CTCTTTAGAT GAACTCCTTG ATAGTATTAA ATTAAACTCT
GTAGAAGAAA AAAAACAAGC CTTGGAAAGC TTAAAGACCT TCAACACTTT TATGATCCAT
TGTCAAGGAA AAAATGATTT AGAAATCCAA ATAAAACTCG GCAACTTAAG ACATAAAATA
CTAAAAGCTA ACTATCCCCA ATATGTAAAA AAATTAGACA TAACTCCCTT AAAAGTAGGC
GAAAAAATAA GAATTGGTTA TGTATCCGCA TGGTTTAGGA ATAATAACAG TGCGAATTGG
GCGTTAGATT GGATTAAAAA CACCAATCGA GAAGAATTTG CAATTTACTG TTATTATACA
GATCAAGTTA GAGATAATAT CACTGAAGAA TTTCAACAAC AGAGTGACTT TTTTGAGCAA
GTGTCTGAAA ATATAGAAGA GATTTGTCAA AAAATTATTA AAGATAGAAT TCATATTTTA
ATCTATCCTG ATATCGGAAC AGTAGAATTA ACAACCTTAC TCGCTGGTTT AAGACTAGCG
CCTATTCAAT GTACAGCATG GGGAGGCCCT GTAACATCCG GTTTACCGAC CATTGATTAT
TATTTATCAA GTGACTTGAT GGAACCGGAA AATGGACAAG ACCATTATTC AGAACAATTA
GTTCGTTTAC CGAATTTAGG CTTATGTTAC CCGAAAATTA AATTCCCTCA AAAGCGAAAG
AACCGACAGG AATTTAATCT AGATGACCAG TCAATCCTCT ATTTATCGAG TCAAAATTAT
TTAAAATATT TACCCCAATA TGATTATGTA TTTCCCAGTA TTGCTGTTCG TGTTCCTCAC
GCTAAATTTG TATTTATCGC CTCCCATATC AATACAGTCA TCAAAGAAAA ATTTATCAAG
CGTCTTCAAA AAGCTTTTGC TGATTTTAAC TTAGATAGTC AAGATTATTG TCTAATTTTA
CCGGTACTTT CTCCCGAAGA TTATCTCAAT TTAAACTTAG TTTCCGATAT TTATTTAGAT
ACTTTTGATT GGTCTGGCGG CAATACAACG ATGCAAGCTA TAGCCTCTAA TTTGCCTATT
GTCACTTGTC CTGGTGAATT TATGCGAGGT CGTCACTCTT ACGGAATGTT AAAAATGCTA
GGGGTTGAAG AAACCATCGC TAAAGATGAA TCTGAATATA TAGACATTGC TGTCCGTTTA
GGGTTAGATG AAGAATGGCG AAACAGTTTA AGAGAAAAAA CCAAAGTTAA TCAAGATCAA
GTTTATAATG ATAAAACTTG TGTGAAAGCT TTAGAAGACT TTTTTAGAAA AACAGTTCGT
CAACCTCAAA AATAA
|
|---|
| Protein sequence | MDYQKFIEQL PQIYDNWGEN NMSPKIKEFL EIEQQIEGEI KANLMALLNL AVANLTPDEI
YCQIGGIFQG KSLIGALLDH PEKEAYAVEI LEGEEEDNLS ELIDNLVRYK RENQVSFCSS
SSLEDVFLEL RELETDSKIG VVFYQSKSDY RSQLLSLLLV KEFLAEQALI IIYNSNYSMV
QQACCDFLLT HPQSQLLLDL STPNAIHYTW GNGVYLIAWE QQQDQSFDEQ LFKQDLLNQP
VIQAISDLHD HFEFKAKPQA INLLVHQARN LSITQGAIEK YREALTWNPY NPDIYYELGV
IYYQQRELEE ASQLLKKAIE LDFLKSQYHY LLGIIYFEQE QWEEAINVYK RAIEAFPKQD
KEYLKIYSML IRILGLIDQR EKAIKVVEQG IKDLPNEILL KLENINILPY IYENEEEINV
YRQRFTHSLD ELLDSIKLNS VEEKKQALES LKTFNTFMIH CQGKNDLEIQ IKLGNLRHKI
LKANYPQYVK KLDITPLKVG EKIRIGYVSA WFRNNNSANW ALDWIKNTNR EEFAIYCYYT
DQVRDNITEE FQQQSDFFEQ VSENIEEICQ KIIKDRIHIL IYPDIGTVEL TTLLAGLRLA
PIQCTAWGGP VTSGLPTIDY YLSSDLMEPE NGQDHYSEQL VRLPNLGLCY PKIKFPQKRK
NRQEFNLDDQ SILYLSSQNY LKYLPQYDYV FPSIAVRVPH AKFVFIASHI NTVIKEKFIK
RLQKAFADFN LDSQDYCLIL PVLSPEDYLN LNLVSDIYLD TFDWSGGNTT MQAIASNLPI
VTCPGEFMRG RHSYGMLKML GVEETIAKDE SEYIDIAVRL GLDEEWRNSL REKTKVNQDQ
VYNDKTCVKA LEDFFRKTVR QPQK
|
|---|
| |