Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_54981 |
Symbol | |
ID | 7195404 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011688 |
Strand | - |
Start bp | 321187 |
End bp | 323255 |
Gene Length | 2069 bp |
Protein Length | 539 aa |
Translation table | |
GC content | 50% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002183725 |
Protein GI | 219126984 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.458082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTTAT GTTGCCTTCC AGCCACAAAA AAAATCCAAC AAAAACCAGA ACCCGTCTGC GGTGTCATAA AACCCAAGTA GCAGAATGTC GAGTAGTGCT ATCTATCAAT CTTGCGCCGG TCAATTCGAT AGCGGTGAGC AGCTTGATCA GCTTCTGCAG TGCCTCTCTA CGGGACATGA CGGCGTAAGT AAAGAGGGGA ACGGGGTCGG CTCTTCTTTT CATTCGATAC TGACTTTTAA CACATATCAC CCTCCTTTCG CTGTGGTTCA GGCGCTAAGC GATCAGACCA GCAACCTCGC AGGAGGTATC GATGCCTTTT ATCTTATCTT TGCCGGGGCC CTTGTCTACT TCATGCAGAC AGGATTTGCT ATGCTCTGTG CCGGATCCAT TCGAGCGAAG AATGTCAAGA ATGTGATTCT CTGGAACTTG CTCGATTCAT GTGGAGGCGG TCTCGCGTTC TGGAGTGTAG GCTATGCCTT TGCCTACGGT GGAGACAATG CTGGGTCCAA GACATTTGTT GGTAACGCAG GCTTTTTCCT CCAGGGAGAT GACATTCGAC TGGAAAACTG GTTTTTCCAA TTTGCCTTTG CTTGTGCCCT TTCCTCAATT GTCGCTGGAA CGGTAAGATA ATGATGCAGC ACGCATTTCT CTATGCATTG ACACACGTCG GCACTAATTC AAGCCGCTGT CTTTAATGAA TTTCAGATCG CTGAGCGCAC TCAAATGAAG GCCTATTTGA TGTATTCCGT TTTTTTGGCT GGGTTTGTCT ATCCAGTTGT CGCCCACGCA TTTTGGTCGA GCAACGGATT CCTCTCCAAC ACAGCCACAG ATCCATTGTG GGGATCTGGC GCCATTGACT TGGCGGGCTC TGGACCAGTC CACATGACCG GAGGTGTTAC GGCTTTGGCG GCAGCTCTGG TTTTGGGCCC TCGCATTGGT CGCTTCTACG ACAAGGAGGG CAATCCTCTC GAAGAGCCAG CCGAATTTCC TCCCCATTCG GTTGCCTTGC AGTTTCTGGG AACGTTTTGT CTTTGGTTTG GCTGGTACGG CTTTAACCCA GGTTCCGTCT TCTTCATTTC GAGTATTGAA AACGGTCAAG TTGCGGCTTT GGTAGCCGTC AATACCACCC TAGCTGCGTG TGCGGGTGCC GTCAGCGCCA TGTTTACTTC AACTTTATTT GACTACTGGT ACACCGGCTT GCACACATAC GATTTGGGCT ACACTATGAA CGGATGTTTG ACGGGATTGG TCGCGATAAC AGCGGGATGC GCGGTAAGTA GGACGCGACT TTCAAAACAG TTATTCTTCA TAACTCGCTA ACTATGACTA TTGCGATACT GTGTTTTCCA GACTGTTGAA ACGTGGGCTG CCGTCCTGAT TGGTATTGGC GCTGGTTGGT TTTACCTGTT GGGTTCAAAG TTGCTTGTCT ACTTCCGTAT TGACGATGCT GTCGACGCCA TTCCCGTGCA TATGGTGGGT GGCGCCTGGG GTGTGATCGC GACGGGCCTT TTTACGAAGG GAGAACTACT ATTGGCCGCC TTTGGCCAGG AGGAACATGT TGGATGGTTC TACGAGTGGG GCAGTGGGAG CGGTAACTTT ACCCTAATCG GAATTCAATT GCTGTCTGTG CTGTTCATTT TCGCCTGGAC TTTTTCCGTC ATGGGAATTT ATTTTTACGC CCTTAGCTTC ATGGGTTGGT TGCGCATAGA TCCGTTGGAA GAGGAGGTTG GTATGGATAT TTCGCGCCAC AAGGGCTCGG CATACGACAT GACTTCAGCA AATATGGAGC AGGTACGGTC GTTGATGGAC GACCGCAGTA CGAGCAATCG AGGCAAGCTG CGTAAGTCGT CCATCATTGA GAAGCCGGCC AAAACAGGTC CGATCGAGGG AGGAACTGCC TCCGGAGAAT CAGAAATTAA GGAGTCGGAC GTGGAACATG CCGAGAGGGT CTAACCATTG ATTCCACTTT CGCCAACCAG GATTCAGAGT TTTGCCTTCA TGAGCGTGGT GTTTGAAAGT GTGGGTTTAC TCTTAGGTAA TGCTACCTCT AGTTAGTGCA TTTAATCGG
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Protein sequence | MSSSAIYQSC AGQFDSGEQL DQLLQCLSTG HDGALSDQTS NLAGGIDAFY LIFAGALVYF MQTGFAMLCA GSIRAKNVKN VILWNLLDSC GGGLAFWSVG YAFAYGGDNA GSKTFVGNAG FFLQGDDIRL ENWFFQFAFA CALSSIVAGT IAERTQMKAY LMYSVFLAGF VYPVVAHAFW SSNGFLSNTA TDPLWGSGAI DLAGSGPVHM TGGVTALAAA LVLGPRIGRF YDKEGNPLEE PAEFPPHSVA LQFLGTFCLW FGWYGFNPGS VFFISSIENG QVAALVAVNT TLAACAGAVS AMFTSTLFDY WYTGLHTYDL GYTMNGCLTG LVAITAGCAT VETWAAVLIG IGAGWFYLLG SKLLVYFRID DAVDAIPVHM VGGAWGVIAT GLFTKGELLL AAFGQEEHVG WFYEWGSGSG NFTLIGIQLL SVLFIFAWTF SVMGIYFYAL SFMGWLRIDP LEEEVGMDIS RHKGSAYDMT SANMEQVRSL MDDRSTSNRG KLRKSSIIEK PAKTGPIEGG TASGESEIKE SDVEHAERV
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