Gene PHATRDRAFT_48873 details

Gene Information

• Locus tag: PHATRDRAFT_48873
• ID: 7194953
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011687
• Strand: +
• Start bp: 538664
• End bp: 541278
• Gene Length: 2615 bp
• Protein Length: 808 aa
• GC content: 54%
• Product: predicted protein
• Protein accession: XP_002183375
• Protein GI: 219126251

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.424343
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AGGTCGGTAA CACCGACAAC GAGCCATCCC CGGAGGTTCA ACGCACACAA CATGAGAAAA 
GCGAAAAAGA AAAAGTCGGC AGCGTCCAGA AGAAACCACG GCAAAGGCCC GCCACAGAAC 
GCCACACAAT CGTCCGTCTC CTGGATCGAC GATCTAGTCT TTGCCCCAGT TCTTCCACAG 
AACATGGGAG ACGAAGCTAA GAATACATTA CACCGTACAA ATGTTGGTCC CCGCACCGGT 
ATCCACGCCA TTAGCGACGA CAACGCCAAC AACAACAACC ATACCATTTC CGTCGTGTCT 
TGGAACATGC TGGCGGAGGC CTACTGCAGC CCCCGTTCCC ACGTCAACTT GCCCGCATCC 
TACCGAAAGG TTGTCTTTGA TCGAACCGCA CGAAGGGATC GTATATTTGC AATCCTCAAG 
CGCTTGGCCC AACAGCAACA GCCCGTCATC GATGTCTTGT GTCTGCAAGA AGTCGACGTC 
CATCTGGACG ACGCCTTGCA AAGGTGGGGG TACGCCGCTG GACGGCAAAC GCCACGTACC 
CGAGCTGGTG GCGGATCCGG AGGCCGTGTA GACGCTTGCG CCGTTTACGT ACGCGACCAT 
CGCTGGCAGA TAGTCGCACA CGAACTTGTG CGCTTGGATG ATCTCGCCAC GCTCCGCTCC 
GCGCCGCATT CGGTCCCTGA CGACCGCCGT ATCGGTAACG CCAGTAATAG TGCCAGTGCT 
ACCAGTCATC TGCAAGGTCT CCAACAGGGG TTTCTGCGTC GCAACGCCGC TCTCTTGGTA 
CGTCTGCGGG ACACTTCGGG AAGGACAGTG GTAGTAGCCA ACGCGCATTT GTATTGGAAT 
CCTGGATTTG AATACGTCAA GGTAAGGTAT CGGGTGCGGG TAGTTCCTCC CGTAGACCAG 
TACAACAACA ATATCAACAT TGTCTTACCA CGGATCCCTT GCTGCTTCTG CGTTCGTGGC 
ACAATCCTTA GATGTGTCAG GCACACTACA TTTTGCAGCG CGCCCGAGCC TTTCTCCAAC 
ACGCCGAGGA ACCCCTCATT TTTTGCGGGG ATTTGAATTC ACGACCACAC GGAGCCGCTC 
ATACCTACCT GACACAAGGA TTCATCAACG CCAAACGCAT AGCACCATGG TACAGCTACG 
GTAAGGCAGA CGAAAGCATG ACAAACGATT GCGAAACAAC TGATGACGGA GCATTGTACA 
ACGAGGCAAA GGATGACGAC GAACCGGTCA CACACAGCGT TCTTGAGCAG ACGTTTTCGG 
CTCTGGATCT CAACGACACG AACAACACCT CAGAACTAGC CAGTCCTCGG ATTCGCTACG 
TACTCGACGC GACGTTGAAT AAACTCTGTC GATGGCTCCG AATTCTGGGT CAAGACGCCG 
CGCTGGAAAC AGACAAGGAG GAAAAATCTC GGACCCAATA CAACGGTACA ATACCCCTTT 
TCGATCGCGC CCGTGAGGAA AGACGTACGC TTGTGACGAC TTCGACGCGA CTCATGCAAC 
GCCGGGATTG TCCCACCGGG GCTTACTGCT TGAATCCCTC TGTTTTGCCG CATTTGGAAG 
TCGCCTTGGT GCATCTGTTG CTGACCCATG GAGTCGTGTT GGAACCGGCT ACGTTCTTGA 
GCCGGTGTGT GGTCTGTAAC GGGAAGATCG TTAAAGTCCA GGAGAAATCT CGACAACGTC 
AAATTTTGGA AGGCTACGAT GCTCCCGTGT TGGCGGAAGA GATGGTAGTG TACGAATGTG 
ACGGCTGTCA GCAAGGCTAC TGGTGGTGTG ATCTGCCAAC GAGTTCAGCA TCGAGGGTGA 
AAACGCAAGC CACCCGACTA TTTCAAGTCT GCTTACAGGC GGGTGTTCCC ATAGACGGGC 
GCGTTCCGGA TTTGTTTGCC CACGTGAATG TGCCACAAGA ACAGGAACAG GGCTGGGACT 
ATACCCAGCC AGGCAGTGAT CTGCTACGGC AAAGGCTGGA CGTAATCGAT TGGCTCAAGG 
ACGAATCTCT ATCTTGTCCC TTTCATTTAG AGAGTGCATA CGCGATGCGA GACGAATCTA 
ACAATCTGGT GGGCGAAGAA ATACCTTTCA CCAACGTGAC GGATTCATTT GTCAATACAT 
TGGATTATAT TTTCTTTGAA CCCAAGCGAA TGGAATTGTT GTCCCGGCTG TACGTTCCGA 
AAAGCTTTCG AGAATTGAAC ACCAAAAATA TTCCGCGGGG ACATTTGTTG CCGAGCGATA 
TATGGCCAAG CGACCACCTT GCGATTGGCG CGACGTTTGC GTTGCTTCCT AGGACCGCTT 
CAACGGACCC ATCCGTGTCG TTAGCGGAGA GGACTGATTC TGCGGCTACA CTGCAAAAGG 
ATCATCGAGG CGTGGCACCC TTGGAGCCAG CCTCAGCGAG AGTCACCAGC GGGTCGGACA 
TAGACAGCGA GTACTGTTTG CCGACGGGTG CTGGAGTAGG TGCGCTACCG ATTCGACCCA 
CGGCTCCAGT TTTTCCAAGG CGGCACAAGA AGCGATGCGA CTGTGGGTGC GTACCGTCTA 
TTCTATCAAT GTTCGAAATG GCGGAACTAC GCAAGCAGGC ACGACTGGCC AAAGCGCAGC 
GCACGGAATC GGGACTGAAT TCTGTAGTCT CATAA 

 

Protein sequence

MRKAKKKKSA ASRRNHGKGP PQNATQSSVS WIDDLVFAPV LPQNMGDEAK NTLHRTNVGP 
RTGIHAISDD NANNNNHTIS VVSWNMLAEA YCSPRSHVNL PASYRKVVFD RTARRDRIFA 
ILKRLAQQQQ PVIDVLCLQE VDVHLDDALQ RWGYAAGRQT PRTRAGGGSG GRVDACAVYV 
RDHRWQIVAH ELVRLDDLAT LRSAPHSVPD DRRIGNASNS ASATSHLQGL QQGFLRRNAA 
LLVRLRDTSG RTVVVANAHL YWNPGFEYVK RARAFLQHAE EPLIFCGDLN SRPHGAAHTY 
LTQGFINAKR IAPWYSYGKA DESMTNDCET TDDGALYNEA KDDDEPVTHS VLEQTFSALD 
LNDTNNTSEL ASPRIRYVLD ATLNKLCRWL RILGQDAALE TDKEEKSRTQ YNGTIPLFDR 
AREERRTLVT TSTRLMQRRD CPTGAYCLNP SVLPHLEVAL VHLLLTHGVV LEPATFLSRC 
VVCNGKIVKV QEKSRQRQIL EGYDAPVLAE EMVVYECDGC QQGYWWCDLP TSSASRVKTQ 
ATRLFQVCLQ AGVPIDGRVP DLFAHVNVPQ EQEQGWDYTQ PGSDLLRQRL DVIDWLKDES 
LSCPFHLESA YAMRDESNNL VGEEIPFTNV TDSFVNTLDY IFFEPKRMEL LSRLYVPKSF 
RELNTKNIPR GHLLPSDIWP SDHLAIGATF ALLPRTASTD PSVSLAERTD SAATLQKDHR 
GVAPLEPASA RVTSGSDIDS EYCLPTGAGV GALPIRPTAP VFPRRHKKRC DCGCVPSILS 
MFEMAELRKQ ARLAKAQRTE SGLNSVVS