Gene PHATRDRAFT_48535 details

Gene Information

• Locus tag: PHATRDRAFT_48535
• ID: 7194777
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011686
• Strand: +
• Start bp: 141363
• End bp: 144776
• Gene Length: 3414 bp
• Protein Length: 1112 aa
• GC content: 46%
• Product: predicted protein
• Protein accession: XP_002183038
• Protein GI: 219125546

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.12643
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCAAGT CGAACGCATC GGCAACACAT CGAACGGCCT CTATGATTAG CGATATTTCT 
CACGAGTTCG AAGAGGAAGG CTTCGGACGA GTACGATTGT TAGCCCCCTT GAGTTCCTCG 
CGACGCGGCC CTTTTTATGA ATTCCGTTTG AATGAAATGA CGGTCAATAA GCTCCAGTTT 
GCTTCGCTCG GTCTCTACGG ACGCGACGAG GAGATACGGA AGCTTCAGGA AGTCTTTGTC 
AAAATGAAAA GCCAATCTCG GGAACTTGTA ATGATTTCGG GCGCGGCCGG AACGGGGAAA 
TCCGCTTTGG CCCAGAATTT ACAGAAATCT GTACAAAAGG CCAAGGGATT TTACATTTCG 
GGAAAATTCG ACGTCAAGCA ACGTGATGAA CCTTACGCAG GCATAGTCAC CGCCTGTCGT 
CAGCTATGTG ACGATGTTTT GTCCTTAACC GAGCCTTTAC CAGAAATTGC ACCAGAACAG 
ACAGTCGAGC CGTGTACAGG ATTTCTGCCT CCACAAAGCT CGCTATATCG TTGGAACTTT 
TCTTTCGAAG AAATGAAAGC AAAATTGCAG CAGGAACTGG GTCAAGAAGC TGAGGTTCTG 
TCGACTGTGA TACCAAACCT GAAACAAATT GTCGGGGGTG ACTATTTGTT GGCACCGGAG 
TCTGGAGTTG GCCGTCTTGA AGCAAGGAAT CGTTTCAACT TCGCCTTTCG GCGATTCATG 
AGAGTAATGG GTAGTTTTGG ACCTCTTGTC ATGGTGCTGG ATGATCTACA GTGGGCGGAC 
TTGGCGTCCC TAGACTTGGT ACAGCTTCTC ATCACGGATC GGGAAAATCC ATCCCTGATG 
GTGGTAGGCT GCTATCGTGA CAACGAAGTT CACGATGCGC ACTTGATGAC AAAAATGATC 
CGTGACATCA AGACGAGCAG TGATGAAGAT GGCGTTTCAT TAACATCAAT TACTGTGGGA 
AATCTCGAAG TTCCACAGGT TGACAAAATG CTGGAAGATT TGCTGTCCTC TACCCCCAAA 
AAGACGATGG AGCTTGCCGA GGTCGTTCAT AAGAAGACAC TCGGTAATGT GTTCTACGTC 
ATACAGTTCC TTTCACAACT AGCGGAAGAT GAACTGTTAT CTTTCAATAT TGGATCTCTC 
AAATGGACCT GGGACATCGA AAAAGTACTG TTGAGTACTG CATCGACAGC AAACGTCGTC 
GAACTGATGC AAAAGAAACT CAACAAGCTT CCAAAAGGGG TTTCAGAAGT GCTTCAGTTG 
ATTGCTTGTC TCGGATCTAC GTTCAACTAT GGACTTTTCC AACTTGTGGT TCATCATCTT 
CACGCAATCA AGCCACCAAA AATTCCGATC GAATCGCCCC AAGTCGATAC CTCCTCTGAA 
AACCCAACTT CCAACGGATT TCGTGCGATT GATTGCTTGA ACATTTCCGT CAACGAAGGT 
ATAGTCGAAT GTTGCGGAGA GTACTCGTTT CGCTGGGTAC ACGATAAGAT ACAAGAAGCA 
ACCTACTCAT TGATAGACCG GGATGAGCTG GTAGGGATTC AATATCGAAT TGGTCAATTG 
TTGATGAACA GTTTGACGCC TGACGATATC GACACCATTA TTTTCGTCGT GGTCAAGTTG 
TTGAACGAAG GAGCAGCAGC AGGTCTTGCC ACGGACTATG CGATGTGCGA TCGAGTGGCC 
AAGTTGAATC TTCGTGCTGG AGTGAAAGCA ATTGAGACTT CTGCATTTTT GACCGCAACA 
GTCTACCTGG CAAAAGGAAT TGAGCTACTG TCCAATGACC ATTGGAACAG CCAGTACGAT 
CTGAGCCTAG AGTTATATTC TACCGCTGCG GAGGCTGAAT TTTGCGTCGG AAATTTCGAT 
CGCATGACCA ACCTTTGCAA TGAAGTCCTG GATTTGTCGA ATCGGCCTCT TTTGGACAAG 
AGACGGGCGT ACAATGTGCT CTTGGATTCA TTGGGTGCGC AAGACCGTAT GAGCGAAGCT 
TCCGAGTTGT GTTTGTACGC TCTATATTTA CTGAACTGCC AACTTCCAAA ATACCTCATC 
AAAATGTTTG TAGTCGCTGG ATTTTTACGA ACCAAGGTTT TGCTCAAGCG TTTGACATCA 
GAAAAAGTGT CCGATCTACC AACAATGAAA GAAAAGTCCA AAATATGGGC AATGGCCTTG 
CTTGGAAGGC TGACAACTTT TTCATACTTG GAAGAATTGG ACATACTACC TCTGGTTATT 
CTCAAAAGCT TGAGATGGAC TCTCCGGTTC GGTGTCAGCG AATTTTCTCC ACCTGCCTTT 
GCTCTCGTCG GCCTATCCCT CGTTGCCCAT CTGAATGATT TCACTGGAGG GAAAGTGTAC 
GCTCAACATG CTTTGAGTTT ACTGGAATCA ATCCACTCCC GTAAAGTAGA GTCGCGCACC 
ATATTTGTCA CCCAGGCTTT TGTTATGCAC TGGACGGACC CAATTCAAAG CACTCGGAAG 
CCATTGTTAC ATGGTTACCA AGTTGGAATG GCAATGGGCG ACACGGAAAG CGCCATGTGG 
TGCATCTACT TCTACCTAGA AAACTCTATG CATGGAGGTG GAACCCTTCC GTGTCTGGCC 
GCTGATTTAC GGATATACAG CAATCAAATG AGGGAATTCA AACAGTCAAA ACAACTCGCT 
TCTACTCTTC TCCTGTGGCA GGTAGTTTTG AATCTGATGG GCGAGTCGGA AAACTCTGTA 
GTTTTGACGG GGGAAGCTGT TAACCAAGAC CTAACTTTGA GGCAAGCACA TGATAACGTT 
CATCTGTACG CCGCGCTCCG ACGAATGCAG CTTTACATCG CATGCTTGTT TGAGGAGTTT 
GAGCTAGCTG TCGGTTTGAT TAAGGAGACG GGGATCAACT ATTTTGAGAA AGTAATGCCG 
GCAGTCTTTG GACTGTGCCC ATTGGCCTTT TTGAATGGAA TGGCATGTTT TGCCGTTGCA 
TCGAAAAGAT GCGGAAGAAA ATATCGGATG TTGGGCAAGA AATTTCTCAG GAAAATTTCG 
GGCTGGGTGG AAAAGGGGGT AAGTGTATTT CTTAGCATCA TGCTTTGTTG ACATGGCGGT 
AGGTCTCACA ACTTGAAACC TTGCACGCGC CAGAATGTTA ATGTCCGTCA CTATGAGTCT 
CTTCTAGAAG CTGAACTCGC TGCCTTGGAT GGACGGCGTA GTATCGCCTT GAAGCACTAC 
GATATTTCTA TTCTTTTGGC TGGTCGTCAA GGATTTATCC AAGACCAGGC TATGGCGCAC 
CAAAAATTGG GCGAATTTCA CTTAAAGTCT GCAAACATGC AAGATGCGGA ATATCATGTG 
GGGGAAGCAA TAAAGCTCTA TGAGGAGTGG GGCGCTTTCC AGAAAGCTCA CCATATTAAA 
GTTAAACACG AAAAGCTTCT TGCGCCTCCC TCCGAAATTC TTGTGGCTAC GTAA 

 

Protein sequence

MFKSNASATH RTASMISDIS HEFEEEGFGR VRLLAPLSSS RRGPFYEFRL NEMTVNKLQF 
ASLGLYGRDE EIRKLQEVFV KMKSQSRELV MISGAAGTGK SALAQNLQKS VQKAKGFYIS 
GKFDVKQRDE PYAGIVTACR QLCDDVLSLT EPLPEIAPEQ TVEPCTGFLP PQSSLYRWNF 
SFEEMKAKLQ QELGQEAEVL STVIPNLKQI VGGDYLLAPE SGVGRLEARN RFNFAFRRFM 
RVMGSFGPLV MVLDDLQWAD LASLDLVQLL ITDRENPSLM VVGCYRDNEV HDAHLMTKMI 
RDIKTSSDED GVSLTSITVG NLEVPQVDKM LEDLLSSTPK KTMELAEVVH KKTLGNVFYV 
IQFLSQLAED ELLSFNIGSL KWTWDIEKVL LSTASTANVV ELMQKKLNKL PKGVSEVLQL 
IACLGSTFNY GLFQLVVHHL HAIKPPKIPI ESPQVDTSSE NPTSNGFRAI DCLNISVNEG 
IVECCGEYSF RWVHDKIQEA TYSLIDRDEL VGIQYRIGQL LMNSLTPDDI DTIIFVVVKL 
LNEGAAAGLA TDYAMCDRVA KLNLRAGVKA IETSAFLTAT VYLAKGIELL SNDHWNSQYD 
LSLELYSTAA EAEFCVGNFD RMTNLCNEVL DLSNRPLLDK RRAYNVLLDS LGAQDRMSEA 
SELCLYALYL LNCQLPKYLI KMFVVAGFLR TKVLLKRLTS EKVSDLPTMK EKSKIWAMAL 
LGRLTTFSYL EELDILPLVI LKSLRWTLRF GVSEFSPPAF ALVGLSLVAH LNDFTGGKVY 
AQHALSLLES IHSRKVESRT IFVTQAFVMH WTDPIQSTRK PLLHGYQVGM AMGDTESAMW 
CIYFYLENSM HGGGTLPCLA ADLRIYSNQM REFKQSKQLA STLLLWQVVL NLMGESENSV 
VLTGEAVNQD LTLRQAHDNV HLYAALRRMQ LYIACLFEEF ELAVGLIKET GINYFEKVMP 
AVFGLCPLAF LNGMACFAVA SKRCGRKYRM LGKKFLRKIS GWVEKGNVNV RHYESLLEAE 
LAALDGRRSI ALKHYDISIL LAGRQGFIQD QAMAHQKLGE FHLKSANMQD AEYHVGEAIK 
LYEEWGAFQK AHHIKVKHEK LLAPPSEILV AT