| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_46568 |
|---|
| Symbol | |
|---|
| ID | 7201849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | + |
|---|
| Start bp | 748626 |
|---|
| End bp | 751205 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180890 |
|---|
| Protein GI | 219120297 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.927409 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GGAAATTGAA GTCGTTTTGG AAACATGAGA TGAGCAAGCA ATAGTAGAAG TGGATCGGTG
ACGCTGGACT TCCGTTTTGT CCAGCGATGT CTCTTCTTTT GCGAGCGAGT AACTTTTGCC
GCCCTTCTCC GACGAGAATC GATGCGAAAC TTGAGCTCAT CCATGCTGGC TGCGTCGGGG
TCGACGGGGA ACAACCCAGT TCGGCTGGAA ACCCTTGCTC GGAAGCTCGG GTGACATTGG
ATGTCCTCCG GACTCTGTGT ATCTTCTCTG GGAGTCTGGT ATGGATAGAA TACGATAAGA
GACGGATTGC AGTGCGTTTG CAGGTTCTGG AGGACGAAGC GAGCAATTCT GATACGGACC
AGCCGGCTGG ACGGAGGCCC GAGCGAGCGA TACAACCGTC TGTCTACGTA TCACATATTA
CTGCCGCCAA TTTTGGCTTA TACGGTGATC GGGCTCATGC GATTTCGGTT GTGTTGAGCA
TTGTTGAACA GGCGGCATGC GAGGCCGATT CGGTTTCTCT GTTGACCTGC GGGAGGCCAT
TGCCGCAATC GTGGAGGGCC TGGAACGAGA CATCGATCTA TGCAACGGAA TCCTGGCCCT
TACCGCCTGT CGAAACAATC TTGCAAACGT CGTTTCTGAT TTCAGTACAT GAGAATGAAC
AACTTTATTT CTATCAAATT GCGGAGATAG ACGGAAACGC CACATCCGAT AATGTATTCG
TGTGTGGTAA TTCAACAAAA TTCACTCTAG TGTCCCCCCT ACCTTCAATC TCTTGCCGCC
ATCTCCCCGA TCTGAACGCA ACGTCACGAC TCTACAAACC CGCTCTGTCC GAGCTACCAC
CACACCAAGA TACGGGGAGG CTTGTTGCGG CCTTAACATT GTCTCCCTCT GCTCACATGG
AAGAGCGCGT CTGCCATGTC GTGGGAACGG ACGCGAACCA CGATGTTTGT TTAGCTATGG
AAGCGGCCGC TCTATGTCTC GGTCGTCGAA TCCTTCATAT CCATGGATTA GCGGGACACG
CGTATGCTTC GGGAAGGAAC ATTTCTAATG GATCGCTGGC GGATCAGTTA TCAGGTTTGG
AGGTTGCCAT TGCCCAGGCC TATGCGCACG CCCCGTGTGT GTTGCATCTG GTTCGTCTCG
ACCAGGAATG GGCAACAAAC GACCACGAAT TACTTTGTGA TACCCAAAAT CGAGTATGGT
CGGTATTGAT GGATTGTTTG AGGGTGAGTG ACAACAATGC GGTCTCCAAC GGCTCACTTT
GGAACGATAG GTCAATTTCA ATCCCGTCAG TGCTGGTTGT CATTTCCACC GCCCGTCTAT
TACAGCCTGG CCCTATGCTT CAGAACCTGG TGTATCCATC TATTCAGTTG AGGCTACCAA
ATCTTTTGTA CGTGGAGCAC CTCTGGCAGC GCACAACAAT AGACGCCACG ATTCCTTCCG
ATGAGCTATT ATCCATATGC AAGCAACTCG AAGGGCGGCC AGTGCATGAG ATCTGTCTAT
TGCAGAAGCA GTATCTGGAG ACAGATCGAG ATTCTACTGG GGACAATTCC ATGCAACTGT
TGGAATCGCT TTGTGTTCGT TTGGACCAGT CGCGGCGGCA GCGTTCAGGG GGCCCCAAAA
TTCCATCGGT ACAGTGGGAA GATGTCGGTG GCCTTGAACA CGTTCGCCGG GAGATTTTAG
ACGCTATCGA ATTTCCTCTC AAGTATCCTC ATTTGTTCCT CGGCAGCTCT ACAGGACGAT
CCGGTATATT GCTGTACGGC CCTCCCGGGA CAGGCAAGAC TCTTGTGGCC AAAGCCGTTG
CAACGGAATG TCAGCTACCT TTTTTATCGA TTAAAGGTCC CGAACTTTTA GGATCGTTTG
TTGGCGAGTC GGAAGGTCAC GTACGAGGTA TATTTGCCCA GGCACTACGG CTGGCATCAC
AAAATACACC CAAAACGGCT TGTATTTTGT TCTTCGATGA GCTTGATAGT CTGGCACCCC
GTCGCGGCGA CACTGCTAGT GGCGGCAACG TCATGGACCG CGTCGTTGCA ACCTTGCTCA
CTGAACTAGA TCGACGGCAC GAGTTTACCG AAACTGTTTT TTGCATGGGT GCCACGAACC
GCCCAGATCT ACTAGACCCC GCCTTGCTGC GGCCGGGTCG CTTGGACCGC CTCGTGTATT
TAGGCGTTTC CAAAAGCAGT CAAACAGGAA TTCTTATGGC GCAAATTCGT AAATTGCGAC
TGCAAGGCGA TGCAGCCCAA TTTGCTACAA AAATCGCCGC GGTTTTGCCA GACAACTTGA
CCGGCGCAGA CTTGTCAACG ATTTCGTCGG GAGCACTCTC TCGAGCAACT CTTCGACTTT
GTGATCAAGC GGATGCGGAA CTTGCAGTGC TGCGGGAGAG CAATCCATCG GCAGTACTGG
ATGATGTACT GGAGTCCTGG GATGAACGTC AGTTGGAACC CACGGTGACG TTGTCGGATC
TTTTGGAAGC TGCCGAGTCG GTCGTGCCAA GCGTCCGACC CGATGAGCTG GAACGCTATG
AGAAGTTGCG TGATCAGTTC CAAATGAGCT AAAATGAACT TTCAGCTTTC CCGTGAATGT
|
|---|
| Protein sequence | MSLLLRASNF CRPSPTRIDA KLELIHAGCV GVDGEQPSSA GNPCSEARVT LDVLRTLCIF
SGSLVWIEYD KRRIAVRLQV LEDEASNSDT DQPAGRRPER AIQPSVYVSH ITAANFGLYG
DRAHAISVVL SIVEQAACEA DSVSLLTCGR PLPQSWRAWN ETSIYATESW PLPPVETILQ
TSFLISVHEN EQLYFYQIAE IDGNATSDNV FVCGNSTKFT LVSPLPSISC RHLPDLNATS
RLYKPALSEL PPHQDTGRLV AALTLSPSAH MEERVCHVVG TDANHDVCLA MEAAALCLGR
RILHIHGLAG HAYASGRNIS NGSLADQLSG LEVAIAQAYA HAPCVLHLVR LDQEWATNDH
ELLCDTQNRV WSVLMDCLRV SDNNAVSNGS LWNDRSISIP SVLVVISTAR LLQPGPMLQN
LVYPSIQLRL PNLLYVEHLW QRTTIDATIP SDELLSICKQ LEGRPVHEIC LLQKQYLETD
RDSTGDNSMQ LLESLCVRLD QSRRQRSGGP KIPSVQWEDV GGLEHVRREI LDAIEFPLKY
PHLFLGSSTG RSGILLYGPP GTGKTLVAKA VATECQLPFL SIKGPELLGS FVGESEGHVR
GIFAQALRLA SQNTPKTACI LFFDELDSLA PRRGDTASGG NVMDRVVATL LTELDRRHEF
TETVFCMGAT NRPDLLDPAL LRPGRLDRLV YLGVSKSSQT GILMAQIRKL RLQGDAAQFA
TKIAAVLPDN LTGADLSTIS SGALSRATLR LCDQADAELA VLRESNPSAV LDDVLESWDE
RQLEPTVTLS DLLEAAESVV PSVRPDELER YEKLRDQFQM S
|
|---|
| |