| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_46336 |
|---|
| Symbol | |
|---|
| ID | 7201892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | + |
|---|
| Start bp | 30573 |
|---|
| End bp | 32284 |
|---|
| Gene Length | 1712 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180738 |
|---|
| Protein GI | 219119979 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.281756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTACGTTCTC CGTTCCGCAG TATCCATTGT TGCAGTCCAT TGTCACTACA GTTGTTGCTG
TTGCTGTCAC TATTATTGTT GTAGCTACTT TTGTGGAAAA ACATGATGCG AAACTTTGCC
AGTGTCTTAT TGCTGTTGAG CAGCGGCGCG GCTGCCTTTG CGCCGGTCCA GCACAACGGG
GTGCGTACCA TCGCCACACC GTCGACGCCG CTCTACGGCA ACACGAAGCA GCCTCCGGCC
TTGCCACCGA TCAAGGATAT TTCCTACGGC GAAGAATCAC GCAAATACCG TCGTACCGTG
TACTCGCACG ATGATTGGGT CAAGCACCGC TCGTCGGATC GATTCCTGCG CAACCTTCTC
GCCATTGGCT CGTCCGGTGT GTACAAGTCG CTCGCCAAGG AAGTCCTGGC AACGACGGGA
GTTGCGACCT TCATCGTTTT GTATAACTGC CTGGTGGGAG GATACACAGA CTTGGAAGGT
ATCAAGCACT CGGCGCTTAT TGAAAGCGTA TGGGCTCCCT TGATGGCCTT GCCTTTGGCG
CCCTTTACGC TCTCCAGTCC CTCGCTCGGT TTGTTGCTCG GTACGTCCCA AGGGAATTCT
CTCGGATAGA CTCGGCATCT AGTCCTCTCG TTCTTGTCGT ATATCGCTCA CATCCTGGCT
CTCTTGTTGC TGTTATTGGC TCTCTTGTTG TTGTTATTGT TGCTGTTATC AAAGTCTTCC
GTACCAACAC GTCCTACCAA CGTTGGGACG AAGCGCGAAA GAACTGGGGA ATGAACATTA
ACCACACCCG CGATCTGGTC CGCATGGGAA CCAGCTTTTA TGACAATGCC GCCGTTTCTT
CCGAACAACG CGCCAAGGAT TTGAAGGCGT TGAGTCTCGC GACCTGGAGC TTTGTCCGCG
CCATGAAGCG GCACCTGTCT CCCGAAAGCG AAGACGAACA AGATTTCCGT CGCGAGCTTT
TCGAACGTCT GCCGGCACCT CAGGCCCAGG CCATTATCGA CGCCGCCCAT CGTCCCAACC
GTGCCTTGTT CGATCTGTCG GTCGCCATTG AAAACTTGCC CATGCACTTT TTGCGAAAGA
ACCAAGTTCA CCAAGCCGTC ACCATCTTTG AAGACAATCT CGGTTCCTCC GAGCGACTCT
TGACGTCGCC TGTCCCTCTC TTCTACTCCC GCCACACGGC CCGGTTCTTG TCCTTTTGGC
TTCTCCTTCT ACCCTTTGCG CTTTGGGATC CTTTTGCCGG GACATGGAAT CACGTGGGTA
TGATTCCCGC CACCGCCGTC ATTTCCATCT TTTTGTTTGG TATCGAAGAA CTAGCTACAC
AAATGGAAGA GCCCTTCACC ATCCTCCCAA TGCAAGCCTT TTGCGACAAG ATTGGCAACT
GGTGCAACGA AATTGTCTCG TGGCAAGCAG GTGATAACGG TATGGCGGTC AACATGCCGA
GCATGATTTC TCCCGAAGGT TTGCCTGAAC TTAAGGAACC AGCCCCGGTA CCCGCCATGG
CGGTAGCCTC CGTCGCAGCC GCAATGCCCG TCATGGCCAA CGGAGACATC AACGGTGATA
CCACGGGAAT CACCATGGAT CAGCCGCACA ATGCCATTCC TTAGTGGACC ACTATTTGAA
TAATGGAAGG CTCGTGGACC TGGGTTCGGT ACAATGCAAT GCGTTGGAGA AGGATTATTA
TTTCGTACTT TTTATAGTCT GTTTTATTCC CC
|
|---|
| Protein sequence | MMRNFASVLL LLSSGAAAFA PVQHNGVRTI ATPSTPLYGN TKQPPALPPI KDISYGEESR
KYRRTVYSHD DWVKHRSSDR FLRNLLAIGS SGVYKSLAKE VLATTGVATF IVLYNCLVGG
YTDLEGIKHS ALIESVWAPL MALPLAPFTL SSPSLGLLLV FRTNTSYQRW DEARKNWGMN
INHTRDLVRM GTSFYDNAAV SSEQRAKDLK ALSLATWSFV RAMKRHLSPE SEDEQDFRRE
LFERLPAPQA QAIIDAAHRP NRALFDLSVA IENLPMHFLR KNQVHQAVTI FEDNLGSSER
LLTSPVPLFY SRHTARFLSF WLLLLPFALW DPFAGTWNHV GMIPATAVIS IFLFGIEELA
TQMEEPFTIL PMQAFCDKIG NWCNEIVSWQ AGDNGMAVNM PSMISPEGLP ELKEPAPVPA
MAVASVAAAM PVMANGDING DTTGITMDQP HNAIP
|
|---|
| |