Gene PHATRDRAFT_42002 details

Gene Information

• Locus tag: PHATRDRAFT_42002
• Symbol: RabX1
• ID: 7201249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011677
• Strand: +
• Start bp: 462364
• End bp: 464376
• Gene Length: 2013 bp
• Protein Length: 626 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002180439
• Protein GI: 219119353

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.707722
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTCAC AGGGAGTTGA TGAAGTCTCC AATACACCCG AAGCCGCGGC TCTCCGTGCC 
TACAAGCTTC GTCAAAAAAA GCGCAAGGGT CTCGTCCGGA AAAAGGAAGC CTCTCTCGCT 
GACATTCTAT TCCCTGGCGT TGCGCCGGAA GAATACGTTC CGGGGGAGCC CGTATGGATT 
CTATCGGATC TTGCCGACTC GCGCAAAACA CCAATTCCCT ACGAATACTA CGATCTTCCC 
GGCAGTTGCC CTCGTCCTAT CGAATCCGAA TTCAAAAAAC GACACCGCGA ACGCAAGAAT 
CTGGGCTCTC GATTACAGGG TCACGACCTT CAGCCTGCGC CTTTCTCAAA TATCAAGGTC 
TTGCAGAATC AAGGCTGTAC GCCACTTTGT ACCGTCACCC TCGATGCCCA GAAGCTCAAG 
AAACTTCGTC GCCTCGTCGA GCGCCAGTAC CGCGTGCAGA TGACGTTGGA TCAATTGCCC 
CTGTTGATGC GTTCCAAGGA GTACAATTAC GCAGTGCGCG GATACCCCAT CGGATTCCGT 
GCCCCTGCTT CCTTCAAGGC TCTTCACGAT GGTGAACTTT ATTTGTTCAA CCACTTGAAG 
TTTGTTATTA CCTATCAGCA GGATCCCCAA AATTTTCAGG GTGTTCGTAT TACTGGTTTT 
GATGTTAACC CGATATCAAT TCAGCACAGC ATGCCTAGTG AAGCGGGACA AGTCGTCAAG 
GAATCGATTT CTTTGGAGAC ATGCAAAGGC GGACCCGTGC CCAACGACCC AGCCTCGTAC 
CTTGCTCTCC GCCCTACTTC AGGTGCCGGA TCATTTCCGA TTGTCTATTC GTATGAAGTG 
CAATGGGTCA AGTCAGATCT AGATTGGACA AATCGCTGGG ATGTCTACCT CGTTGGTGCC 
CCCGACGACG ACTTGCATTA CTTTTCTATT GTCAACTCGC TCATGATTGT ACTTTTCTTG 
ACTGGTGCCA TTTCTACCAT CATGATTCGG ACCCTCCGCA AGGATATAGC GATTTACAAC 
GAAATGGACT CACTCGAAGA AGGCAGTGAA GAAACGGGCT GGAAGCTTGT CCACGGCGAC 
GTCTTTCGTC CTCCGCAGTT TAACCCTTCT TGGCTATGCA GTTTGGTTGG TACCGGCTGT 
CAAATCGGTC TTGCTTTTGT ACTTGCCATG CTTTCGGCTA TGCTCAAGTT GCTGAATCCG 
TTGCAAAAGG GACAAACGTT GACGGCGTTG ATTCTGTTGT ACGTATTGTG CGGTTCGGTT 
GCGGGTTATG TTTCATCGCG TTTGTACAAG TTCACGGATG GGGTTGCCTG GAAGCGCAAC 
GTCTTGCTCA CCGCCATGGG ACTTCCCGGG ACATTCGTTT CGGTTTTTGC CGTGTTGAAT 
ATCTTTTTGA CGTTTGCCGG TGCCGCCACA GCTGTCTCTT TCTGGTTGAT TCTCGCTCTC 
TTTTTGCTTT GGACGTGCGT CTCCGCACCC TTGGTCTTCC TTGGTGCATA CTTTGGCCTC 
AAGAGCGCCA AGATGGAATC ACCTACCAAG ACAAACCAGA TTGCACGTGT GGTGCCGCCT 
CTTCCTTGGA ATGTTAAGAT GCCGTTTGCT TTCCTGCTCG GTGGAATTTT GCCATTCGGT 
TCCGTTTGTA TTGAATTGGC GTTCATCATG AGCGCTCTTT GGCTGCATCA GATGTACTAC 
GTATTTGGCT TCCTGTTGGT GGTTGGCTGT ATTCTCGCTG CTACCTGTGC CCAAGTCTCA 
ATGGTCATGA CTTACCTGCA GCTCTGCGCC GAAGATCATC GCTGGTGGTG GTCGTCTTTC 
TGGACTACTG CCAGTGGCGG TGCGTATCTT TTCGCGTACG CCGTTTGGTT CCTTTCCTCC 
CGCTTGAGCA TGGCTGGTCT CCTTCCAGTC GTTGTTTACC TTACCTACAT GGGAATGATC 
AGCATCGTGT TCGGTCTCTT TTGTGGAAGT GTGGGTTTCT TGGCGTCGTT GTGGTTTACT 
CGCACTATTT ATGGTGCGGT TAAGGTGGAT TAA 

 

Protein sequence

PGVAPEEYVP GEPVWILSDL ADSRKTPIPY EYYDLPGSCP RPIESEFKKR HRERKNLGSR 
LQGHDLQPAP FSNIKVLQNQ GCTPLCTVTL DAQKLKKLRR LVERQYRVQM TLDQLPLLMR 
SKEYNYAVRG YPIGFRAPAS FKALHDGELY LFNHLKFVIT YQQDPQNFQG VRITGFDVNP 
ISIQHSMPSE AGQVVKESIS LETCKGGPVP NDPASYLALR PTSGAGSFPI VYSYEVQWVK 
SDLDWTNRWD VYLVGAPDDD LHYFSIVNSL MIVLFLTGAI STIMIRTLRK DIAIYNEMDS 
LEEGSEETGW KLVHGDVFRP PQFNPSWLCS LVGTGCQIGL AFVLAMLSAM LKLLNPLQKG 
QTLTALILLY VLCGSVAGYV SSRLYKFTDG VAWKRNVLLT AMGLPGTFVS VFAVLNIFLT 
FAGAATAVSF WLILALFLLW TCVSAPLVFL GAYFGLKSAK MESPTKTNQI ARVVPPLPWN 
VKMPFAFLLG GILPFGSVCI ELAFIMSALW LHQMYYVFGF LLVVGCILAA TCAQVSMVMT 
YLQLCAEDHR WWWSSFWTTA SGGAYLFAYA VWFLSSRLSM AGLLPVVVYL TYMGMISIVF 
GLFCGSVGFL ASLWFTRTIY GAVKVD