| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_51876 |
|---|
| Symbol | RAD50 |
|---|
| ID | 7200598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | - |
|---|
| Start bp | 425431 |
|---|
| End bp | 430616 |
|---|
| Gene Length | 5186 bp |
|---|
| Protein Length | 1436 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | Rad50 DNA repair/recombination protein |
|---|
| Protein accession | XP_002179845 |
|---|
| Protein GI | 219118128 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.347937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TGAAACGGGA CAAAAAGCCA AGGTAGTGTA AAGAAGCCAA AGCATCCAAT CGAAACAGGT
AGGAAGGGGT AGTTGATCCG AAGCTGTGAG ATCCGGCCGG ATAGAAGTCG CTTTTCGATC
TTACCAAGTG TAGCGATATG GCTTCGGTCA ATAAATTGTC AATTAGGGGT ATTCGATCAT
TCTCTCCCGA AGATGCGGAA CAGGTAAGCC ATGACTTAGC TTTTTCAGTC GAGTACGATG
CCGACACTCA CGCCAAACTC GATCGGCATA CTCACATCAT TGTCTGTCGA ACAAGGTCGT
CGAGTTCTAC TTTCCGTGCA CAATCATTGT CGGGGCAAAC GGATGCGGAA AGTACGTATT
ATGCGCGAGA AGACTTTTCT ATTACAATAA TTGTTGTACT CATTGAATTG ATTTGGTTGG
CTCGCAGAAC GACAATCATT GAAAGTTTGA AATATGCAGT CACGGGATCG TTCCCGCCGG
GCAACAAGGC CGGCCAAGCT TTTGTCCACG ACCCGCGTAC TATTGGACAG CCCCAGGTCA
AAGCAAATGT CAAATTGCGC TTTACGTCTC GTTCCGGACA GACCATGGTG GTAGTTCGCT
CTATGGAAGT CAATCAAAAG AAGACAGCTA TGACTTTCAA ACAGCTCGAC GGCGTCCTCC
GTATGATGGA TCCGAATACG GGGCAGCGCG TTTCACTGTC CCATAAATGC ACCGAATTAG
ACAAACAACT ACCAGCACTT TTGGGTGTTT CGAAATCTAT CTTGGAACAC GTCGTCTTTT
GTCATCAGGA AGACGCATCC TGGCCTTTAA TGGAAGGGGC AGTTTTGAAA AAGCGCTTTG
ACGATATCTT TGATTCGACG CGATATACTA AAGCCTTGGA TGCCTTTCGG AAGACGGAAA
AGGAAATGAC TGCCACTGTC AAGGACCTGA AAATCGAATT GGCTGGTTTA AACTCAAGCA
AGATCGCGGC CGACGGATTT CGAAAGGATT TGGTAGGTTA CCAGGAAGCT TTGGAAACTT
TGGAAGAAGA AAAGCAGCAA GTCGTCGAAG GCATTGCCGA GGCCGATCGC GACATCCAAG
TGTATCAAGG GATTGAAGCC AAAATCAACA ATGTGGATGC AAAGATTGAT AGCCTCAAGA
ATCAGCAAGC GCAGCTGGTA CAGGTCCGTA TGACTCGGCA ACAAATGCTA GAAGAAGATT
TGACCAAGAA ACACTCGCAG CAGGAACTGG AACAGATGTT AGATGACTTT GGGGGGAAAG
TCTCGGAGCA ACTAGATCAG CACCAAAAAA TGCAGCAAAG ATATGAAGGT ATGGAAAAGG
AGGTAGACAC TTTACGACAC GAGGAAATTC GGTTGAATTC CCTCCTTGGA AAGCTCTCGG
CCGAAAAGGA GGCCCATGAA GGCCGCCTAC TGGAGCGGTA TAAAATGATG GAGACCATTG
CACAAATGTA CAGCATTGAT TTGCATTCAG TAGAGTTTTC ACAGGGTAGT AAGTCTTTGG
CGGCGGCAAC TCTGTCCGCA AGTCTGGCTT CTCAAAATGC ATTCGGAAGT CAAGATGACT
TGGATCTTGC AGCCGGTATC ACCTCGAATG ATATGCATAG TTTCTACATA GCTCTCGAGA
AAAACGAAGA AGATTTGAGT GGGAAACTCC GAGATTTCCG TGGAGAATCT CAAGCTAGAG
ACGACGCTTT GCAAAATGAG CTTGCCACTC TTGGTGGACA ATTGTCTGTG AGCGAAACAG
GTGAGTTTTC GTATTAGCGG TATTGTTACT ATACGATTCA TATAGCTTAC GTTAAGCTTT
GTTCTATGGC CCAAAGAGCG CGCCAAACTA GCAAGCAGAC GGAATGGTCT GCAAAAAGAG
CTCAGCGCTA TCTCGAGTCA AGTTGCCAAA CCATCTTGGA TACGAATGAC TGATGTAAGT
AAGCAACTTT CTTTTATCGA TTGAAAAGTC AACGATTTAA ATCTAACACG GTGTTGCGTT
TATTTGTAGA TCGAGGATGC TCGCAAGCAT GCCATAAAGT TTGGTATGTT GCCCACCGCA
TTTCCATACA TGTGAATTAA TTAATTTTTC GTTTCTCATG AACCTCACTG TTATTTTAGC
AAAAAGTCGA GACGAGGCGA ATCAGAATCC TCGACGAAAA GAGATTCCTA CCGAAATCCT
TCATTTACAG AGCAAGATTG ACAGTATCAA GCGGACAATT GACCTAGATC AGGAATTGCT
TGATCGTCTC CGTAGCACAG CTGAGTCCCA AAACGCCATA AATGTCTTGC AAGAACAAGC
TCAAAAAGAC TTGGACGAGT TGAACGAGTC GATCCGCGAT CAGTCCCAAT TACTTCAAAA
GTACAACTTT GCTTTCGAAG GACATTTTGC CAAGGAAGAT GACGACAATG GTGAGAAACT
TGGAGAAGTA GTCTGTAGTC TAGTATCAGC CATAGGAGGA AAATACGAAT CTTTTCGTGC
GGATCTGGAT CGGGCTAGTT GTGATGTCTC GAAGAACGAA AAGGTTGCGT CTGAGAAGGC
TGCTCTTCTA GCCAATTCGC AGCGCGCGGC CGCAGGAGTA AGATCCAAGC TCGACGGACT
ACATACCACT ATTACAACCG CTCGAAAGCT TACTGTCGAT CTCCAACGCC ACGAGCAAAG
CCTTTCATGC ACAGCGCGAG GCGACGAGAA CGACCCGCGC GAGATTATAA AGTACCTTGA
GGAACGACTG GATTCAATAG AAGAAGATTC GCCATCTGAG GAGCAACCGA AGGCCATAAA
AAAAGTACTG AAGCGTCTGT ATAAGATGGT AAGCATGATT TTTGCGGCGC TCTCAAATTT
TTTTCGTGTC TCATCGGCCT CCGTTTAATG GCCACAGTCA AAAATTCGAG ACGCTTCCGG
AGAAATAACT GCCATCCGAT GTCCTTGTTG TCGCCAAGAT CTTGGTGGGA GATCTGCAGA
GGATATGAAA GCGATGCTTG ACGAATTAAA GGTAGACCCT GCACTTACAG AGATTGACGA
GAAGGCCATT GAGCATTATA AGAATTTGAA AGAGACTTAT CAGGGATGGA AAGAACAGGT
TGAAAAGATG TCGGATGACC TGCGAGATGT AAAACGTCTT GATAATGAGC TGAGTGATCA
CACGAAAGAT GTAGAGAAAT TTGAGAATGA GCTTGGGCGA TATCGTAGAA TGATTGTCGA
TGATATAGAG CGTCGAGATG AGGCTACTGT GGCTTTTACT GAGATACGGG AACTGCTCGA
TGTTGCAAAA CGTTGGTCTA CCGATGTCGC CCGCATTGTT GGGAAAAAGA TGCAGATCAA
TCAGAAAACT ATGGATTTGC CCTTCAGTGG AAATGACGGA CCAAGACGCG ACCTCGAAAC
AGTGGAGCGT GAAATGACGA GAAACATCAA AGAAAAAGAT ACCTTGATGC TAAAGATTAA
CGATTTGAAT AGAGAGATGA TGAACTTAAA CAACGAGGTG TCAGATCTCG CAACGAAGGT
ACGCTTTCCC CGGCCCGCAT GTAGCAGAAT GATGGAAAAG GCGAACTAAC AATTACGTCT
TCAATCATTA AGGCAGCGAA TACTGACAAA GCTCTCCGCG ACAAGGAGGC GAAATATGTC
GAATCGCAAC AGGCTGCCGA ACGAAAGATG GAACTCACTC GAGTATTGCA AGAGATTTCG
GCTGCTGAAA AAGAGGTAGG CTTCGACGTT GTACTATTTA ACTAACATTG GGCTGCGCCT
CAAAATTTAT CTTTTCTGTG TAGATTCAGA AAAGCATGGG GCCTCTTCAT GAAAAGATTA
AGGTGAAAGA GGATACGAAG CGCCAACAAC GCTATGCGAC GAATGAACAG GAGCACCATC
TCCAGGACGC TTTGAGCCAA TTTCGAAATG ACTTTAATCA ACTTCGTGAA ATTTCGCGTC
AGATTGAGGA GCACACATCT TCCGACAAAG GTCAAAAAGA TGTCGATGTT TCCAGCCAGA
TGACCAAGGT TCTGGCACTT CGTAACAAAA TGGTCGCAGA ACTTCAAGTT TTAAGGCCGG
AACTAGACGG TCTCATGACT GCCGTTAACG ATCAAGAACG ACACAAAAAA CAGCTTAAAG
CCAACATTGA TGTCCTCGCA GCCAACAAGC AAATTCAGGA GCTCGAAGAA GGAATTAATA
GTTTCCAGGA GGAGCGTGAA TCGATTGATG GAGCCGACAC TGCTTCCGAG CGTCTTTCGA
ACGCAAAAAG TACCAAGGAA AAGCAAGCCT CTATGAAGTC CCGCATAGAA GGCCGTTGGC
ACGAAATTAT AGAGCAGATT AGGGCAGTCA AGGTAATTCT TTGAGAGTGA CTTTCTTCAA
TTTTCTCAGT TCAAATGGTC AACTCATTCT TTTATTTAAG CGGAAACTGT CGTCTCCAGA
CTACAAAAAT GTCGACGAGA AGTTCCGCAT CGCTCTAATT GATGTCGAGA CAACTCAGAT
CGCATCTGAG GATCTGAAAA AATATGGCAA TGCACTGGAT AAGGTACGTC TTGCTTATAT
AGGACCTACC ATCAATACGA GACCATACCT TAACCTCCAA TTTCTGCAGG CAATATTGAA
GTTTCACCAC GTGAAAATTG ATGATATCAA CAAAATTGTG CGCGAGCTGT GGTTGTTAAC
GTACAAAGGT GAGAGGGGTT GGGTTCAGAG GTAAATTGCA TGTGTTTAAG ATGCTCTATT
CTCACGATAC ATCGTCGCAT GCAGGTGAAG ACATTAGTAG CATTGAACTG GTTTCAGGGC
AGGAAGCAGG CTCACGCGCT CAAAAGTCGT ATAACTATCG AGTTGTGATG ACGAAAGGTA
CTTCCAAGCT TGATATGCGT GGGCGGTGCA GTGCTGGTCA GCGTGTTCTT GCGAGCATTG
TGATTCGACT AGCACTGGCG GAGACCTTTT GTATAAATTG TGGTTGTATC GCGTTGGATG
AACCAACCGT GAATCTAGAT CATCGTACCA AGAAAGGACT TGCCGTGGCT CTCGCCCAAA
TCATTGCATC GCGTTCTCAA CAACGCAACT TTCAGCTCAT TTTGATCACG CACGACGAAG
AATTCGTCGC AATGATGAAG ACGGAACTTT CTACTCTGAC TGGATTCTCC ATGCCAGAGA
AATATTTTCA AGTGAGACGT GAGCTCGCCT CCGACGGCAA GTACTACTCA AAGATTAGCG
CCGTTGATTG GGATGAATTG GTCTAG
|
|---|
| Protein sequence | MASVNKLSIR GIRSFSPEDA EQVSHDLAFS VEYDADTHAK LDRHTHIIVC RTRSSSSTFR
AQSLSGQTDA EITGSFPPGN KAGQAFVHDP RTIGQPQVKA NVKLRFTSRS GQTMVVVRSM
EVNQKKTAMT FKQLDGVLRM MDPNTGQRVS LSHKCTELDK QLPALLGVSK SILEHVVFCH
QEDASWPLME GAVLKKRFDD IFDSTRYTKA LDAFRKTEKE MTATVKDLKI ELAGLNSSKI
AADGFRKDLV GYQEALETLE EEKQQVVEGI AEADRDIQVY QGIEAKINNV DAKIDSLKNQ
QAQLVQVRMT RQQMLEEDLT KKHSQQELEQ MLDDFGGKVS EQLDQHQKMQ QRYEGMEKEV
DTLRHEEIRL NSLLGKLSAE KEAHEGRLLE RYKMMETIAQ MYSIDLHSVE FSQGSKSLAA
ATLSASLASQ NAFGSQDDLD LAAGITSNDM HSFYIALEKN EEDLSGKLRD FRGESQARDD
ALQNELATLG GQLSLTLSFV LWPKERAKLA SRRNGLQKEL SAISSQVAKP SWIRMTDIED
ARKHAIKFAK SRDEANQNPR RKEIPTEILH LQSKIDSIKR TIDLDQELLD RLRSTAESQN
AINVLQEQAQ KDLDELNESI RDQSQLLQKY NFAFEGHFAK EDDDNGEKLG EVVCSLVSAI
GGKYESFRAD LDRASCDVSK NEKVASEKAA LLANSQRAAA GVRSKLDGLH TTITTARKLT
VDLQRHEQSL SCTARGDEND PREIIKYLEE RLDSIEEDSP SEEQPKAIKK VLKRLYKMSK
IRDASGEITA IRCPCCRQDL GGRSAEDMKA MLDELKVDPA LTEIDEKAIE HYKNLKETYQ
GWKEQVEKMS DDLRDVKRLD NELSDHTKDV EKFENELGRY RRMIVDDIER RDEATVAFTE
IRELLDVAKR WSTDVARIVG KKMQINQKTM DLPFSGNDGP RRDLETVERE MTRNIKEKDT
LMLKINDLNR EMMNLNNEVS DLATKAANTD KALRDKEAKY VESQQAAERK MELTRVLQEI
SAAEKEIQKS MGPLHEKIKV KEDTKRQQRY ATNEQEHHLQ DALSQFRNDF NQLREISRQI
EEHTSSDKGQ KDVDVSSQMT KVLALRNKMV AELQVLRPEL DGLMTAVNDQ ERHKKQLKAN
IDVLAANKQI QELEEGINSF QEERESIDGA DTASERLSNA KSTKEKQASM KSRIEGRWHE
IIEQIRAVKR KLSSPDYKNV DEKFRIALID VETTQIASED LKKYGNALDK AILKFHHVKI
DDINKIVREL WLLTYKGEDI SSIELVSGQE AGSRAQKSYN YRVVMTKGTS KLDMRGRCSA
GQRVLASIVI RLALAETFCI NCGCIALDEP TVNLDHRTKK GLAVALAQII ASRSQQRNFQ
LILITHDEEF VAMMKTELST LTGFSMPEKY FQVRRELASD GKYYSKISAV DWDELV
|
|---|
| |