Gene PHATRDRAFT_51868 details

Gene Information

• Locus tag: PHATRDRAFT_51868
• Symbol: CRTISO1
• ID: 7200580
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011675
• Strand: -
• Start bp: 329508
• End bp: 331451
• Gene Length: 1944 bp
• Protein Length: 633 aa
• GC content: 50%
• Product: carotenoid isomerase
• Protein accession: XP_002179831
• Protein GI: 219118099

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAACA TATCGAAAGA CCGCCTCACG GGGCGTTTTC TGGCATTCCT GCTGCTAGTC 
TTAGCGAACA AGGAGACATC TTCATTTTGT GTTCAGTCAG GCTATAGATC GAGACATTAT 
TTCTCAGCAA ACTTTCTTTC GGTACAGCCC TCCGATGTAG CGAGGGGTAG CTCCACAGCT 
CCTGCTGCTG CCATTGCTGA TGCTCCAACA GGATCGATCT ATCGCGAAGA GACTGTAGAT 
GTGGTAGTGA TTGGGGCCGG CGTAGGTGGT CTTTCCTGTG CCGCACTCTC TTCCAAGTAT 
GGGATGGACA CCCTGTGTTT GGAAGCTCAC GATACTGCCG GCGGTTGTGC CCATTCATTC 
GAAAGATACA GTGCGGCATC GAAAACAACA CCCTTTCGCT TTGACTCTGG ACCGTCGCTG 
GTTTCGGGAC TCTCGGAAAA AGGTACCAAT CCGTTGAGGC AAGTTCTGGA TGCCGTCGGC 
ACAGCGGAGG AGGTTCAATG GAAAACATAC GATGGATGGC TGGTGCACGA TACGTCCGAC 
GACAAAGTTT TCAAAGTGAC TACAGGCGAT AGTGGCGCAT TTGAAGACGC GCTCGAGAAA 
AAGGCAGGAA TCAATGCGAA AAGAGAATTC ATAGAGTTCA AGAGAAAGGT GTTGGAGGAA 
GGGGGCCTTG CCGAAGCGAG TGCATATATT CCACCATTCG CTCTACGAGG AGGGATTACG 
GCTTTGGCAA GTCTAGCGAA TTACATGTTC AAGCTTTTGA GCATCGGTAG TAAAGGAGCC 
TTGTTGACGG GTCCTTTTTC CAAAGTTATG GACTTGCATG GACTGAAGGA CCCATTCGTA 
CGCAAATGGT TCGATTATTT GGCGTTTGCA CTTTCGGGAG TCGACGCCTC GCACACGCAG 
GCGGCCGCGG TGGCCTACAT GATGATGGAT CTACACAAAA AGGATGCCGT ACTGGACTAC 
CCCATGGGAG GAATGGATTC TCTTGTTCAA GCTTTGGTTT CGGGGATCAA AACAAACGGA 
GGCGAGCTTC GATTGAACAG TCGCGTGGAA CGAATGATAT TGGAAGACAA CAATGGTCGC 
GTCGAATGCA AAGGTGTGGT ATTGACGGAT GGCACAGTAG TAAATGCTCG AAAAGGAGTT 
GTTTCCAATG CGCCAATTTG GAACATGGCT CGCATATTGG AAGATTCTGT GCCTGGTGAA 
GTAAACGATG CCAGACGTTC TATCGTCAAA GCAATCCAGA AACAAGCAGA TGACATGTCC 
ATGACGGGAT CATTCATGCA TCTTCATCTT GGTATTCCGA AGGCTGGTCT TCCCGAACAT 
TTAGAATGCC ACCATTCTGT CTTAAACATG CAAGATGATG TGACAGCCGA GCAAAACATG 
GTAATTATAT CCATTCCGAC CGTGTTTGAT CCAAGCTTGG CTCCAGAAGG TTACCACGTT 
GTCCACGCTT ACACAGCAGC TTGCGATGGT TTCGACCAGT GGACACCGTA TCTCGACAGC 
GGAAAAGAAA CTGGAAAAGT CGGTCACAGC CCCAATTCCG TTAAGTCTCT TGCCTACACT 
AAAGTTGATG GCTACAACGA ACTAAAGGAC GAAAAAGCGG ATGTACTGTG GAGGGCGGTC 
GAGAGAGTGA TTCCTGACGT TCGCCTGCGT GCGAAGCAAA AAGGCAGCAT TATCTTAGTA 
GGCACTCCCT TGACACACAG ACGATACAAC CAGAGGTATC GGGGTACGTA TGGGCCCGCA 
CCTGGCCCGG GTAAAGACGT TTGGGAATTG GCAGGGGCAA CGACTAAAAT CAAAGGTCTC 
CTTGCTTGTG GCGATTCTAC CTTTCCGGGG ATCGGTTTGC CCGGTGTGGC TGCAAGTGGA 
ACAATAGCCG CAAATACGAT GACCACCATC GCAAATCAAA GGAACCTTAT GAAGGAGCTG 
AAGGCGAAAG GCGCCCTCCA ATAG 

 

Protein sequence

MANISKDRLT GRFLAFLLLV LANKETSSFC VQSGYRSRHY FSANFLSVQP SDVARGSSTA 
PAAAIADAPT GSIYREETVD VVVIGAGVGG LSCAALSSKY GMDTLCLEAH DTAGGCAHSF 
ERYSAASKTT PFRFDSGPSL VSGLSEKGTN PLRQVLDAVG TAEEVQWKTY DGWLVHDTSD 
DKVFKVTTGD SGAFEDALEK KAGINAKREF IEFKRKVLEE GGLAEASAYI PPFALRGGIT 
ALASLANYMF KLLSIGSKGA LLTGPFSKVM DLHGLKDPFV RKWFDYLAFA LSGVDASHTQ 
AAAVAYMMMD LHKKDAVLDY PMGGMDSLVQ ALVSGIKTNG GELRLNSRVE RMILEDNNGR 
VECKGVVLTD GTVVNARKGV VSNAPIWNMA RILEDSVPGE VNDARRSIVK AIQKQADDMS 
MTGSFMHLHL GIPKAGLPEH LECHHSVLNM QDDVTAEQNM VIISIPTVFD PSLAPEGYHV 
VHAYTAACDG FDQWTPYLDS GKETGKVVDG YNELKDEKAD VLWRAVERVI PDVRLRAKQK 
GSIILVGTPL THRRYNQRYR GTYGPAPGPG KDVWELAGAT TKIKGLLACG DSTFPGIGLP 
GVAASGTIAA NTMTTIANQR NLMKELKAKG ALQ