| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_53175 |
|---|
| Symbol | Rab5c |
|---|
| ID | 7199942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011674 |
|---|
| Strand | - |
|---|
| Start bp | 747263 |
|---|
| End bp | 747884 |
|---|
| Gene Length | 622 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179496 |
|---|
| Protein GI | 219117403 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAG CGAAATGTAG GGACGATGTC ACGGTAGATA GATCCACCAA AGTCGTCCTT
GTGGGAGACT CCGGGTGGGC AAAACAAGTC TGGCTCTTCG ATTCGTTCAG AATGAGTTTC
ATCCGTTTCA AGAAGCAACG ATCGGAGTCA GCTTTCTCAG CAAAACCGTC ATCTGTATTG
ATACGAACAA AGCCATCAAA TTGAAAATAT GGGATACCGC AGGTCAAGAA CGCTATCAGT
CTTTGACCCC ACTATATTTC CGAGGCGCCG GGGCTGCCAT TCTTGTATAC GACATTTGCC
GCCGACATTC GTTTCAAGCG TTGGGGTTCG GGAACTACGA CAATTTGGCC CAGAAAACAT
CTTGCTATTC GTCTGCGGCA ATAAGTTTGA TTTAGCGGAC AATAGATCCG TGAGCGAAGA
AGAAGCCCGA GAGTTTTCGC GCTCTATTAG TGCTTACTAC ACGGAAACGT CGGCCCGCAA
CAATCAGAAT ATAGCGGAAC TCTTTCAAGA GCTAGCGCGT CAATCAGCCG CCACGCTTGT
TAACGAAGAC TCGCTTACAG TTAACGACAA CACCGTAGAT TTTAGTGCAA GTGAGGTACC
AAAAAAAACA TGTTGCCTCT GA
|
|---|
| Protein sequence | MTAAKCRDDV TNEFHPFQEA TIGVSFLSKT VICIDTNKAI KLKIWDTAGQ ERYQSLTPLY
FRGAGAAILV YDICRRHSKH LAIPDNRSVS EEEAREFSRS ISAYYTETSA RNNQNIAELF
QELARQSAAT LVNEDSLTVN DNTVDFSASE VPKKTCCL
|
|---|
| |