| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44930 |
|---|
| Symbol | |
|---|
| ID | 7199833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011673 |
|---|
| Strand | + |
|---|
| Start bp | 668146 |
|---|
| End bp | 670121 |
|---|
| Gene Length | 1976 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178823 |
|---|
| Protein GI | 219116056 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.541672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTATA ACAAAAACAG TCTTTTAGTC AAATTTAAAT TTGCATTTTA CGTCGTGATT
GTGAATTTGA AAGATTCGGA GACCGATACT CCGCACTACC ACGTGCTGTC CGGAATGTTT
TCTCGCCCAT TCTGTTGCTG TTTGAGCGAG GCGTCAATCT ATTGGCTGCG AGAGACGATA
TTCACTGTTG GTGTCAATGT ACGTCTCGTT CCTAACAGCA ACCAGAAAAT GCGTTCACGC
AATTGGCTGG CTCTGGTTCT AGGAACGAGT GCTATTTTGC TTGGTCCAGT TACTGCCCTT
TTTGGACGCG CTGCGCTTTT CCGATCCCAT CCCCGAAACG CCACAGTTGA TCTGCGGAAA
ACGAGCGGGT TTACGCTGCG AGCTGGATCT TCTAATTTAC CTTGTGTGGA GTATAATGGG
GAGGAACCTC CCAAACGGGC TGTCGTTCTT ATGGACGCTT TCTGTCCGTA CCATGGTCTT
TATTTAGCGA ACGCCGTTCG GGAACGCTTC CCCGATACCG CCGTCGTGAC CGTTCTGTCC
GACTATTTAT ACGCGTTTTT GTCAGCTACG GAACCAGAGT CGCAGGCACA GTGGGATTCC
ATGCGAGTTC CGCAAGACGA GACCACTCTT GCTATCTGGC AGTCATTACC CGTTGCATGG
CAGGCAGTGT ATTGCGAATC GGATTCGGGC TTGGAAAGTG CGGAAGCTTT ACGAGAGGTT
TTAGGTGTAG CCTGCCGGGA CAAGCCGGTC ATGTTATCAG CTCGAAGACA CAAATACAAG
ATGAATGATC GCGTTAAATC AGTAGGTTTG GAGTCTGTTA AACAAAAGAT GTGTGATTCG
CTGGACGAAG CCCAAGCCTT TGCGCAAGAG CTGGGCCTAT CAACAGGGGA ATCCCTGCAA
GCAGTAATCG TCAAGCCGTT TCGAGGGGTC GCGTCGGAAT CCGTCCATTT ATGCCATGAC
AATGCTGAAA TAGAATCTGC GTGGAATTCA ATAACGTCCA CGGCGGTTTT TGGGTGCAAA
GGTCGGCACG ATTCTGTTCT TGTTCAGGAG TTCCTGCAAG GTTGCGAGTA CGCCGTAGAT
GTCGTACTGC GCGATGGTGT TCCGAAAGTT GCGGCAGTGT GGAGGTACGA CAAGACGCAA
GCAAATGGTG CTCCCTTTTG CTATGTTTGC ACGCGTCTGG TTGATTCGCA TAGTGATCCG
CAAGTACCAG TGGTTTGTGA CTATGTGCTA GACGTCTTAC GAGCTTTGGG TGTAAAATGG
GGTTTGAGCC ACAATGAAGT GATTGTCACA TCCGACCGTG GGCCGGTCTT GGTCGAAGTG
AATTGCCGCC AGCATAATAT GGACTTTTGT CCGCTCACCA TGGCTTGCAT CGGATACAAC
GCATTGGATA TGACGGTCGA CGCTTTATTA GGGGATGAAG AAAGCTGGAA AGTGACCTAT
CCCGCTTTTC CCGCATTGCG AGCGCAGGGG TGCATGGTGC ACTTAATCAA TTACGCGTCG
GGCGTGCTGA ACGAAGTAAA GCATCTGGAA GAAATAGATG CGCTACCAAG TGTCCTGAAC
TGGGAGGTCT ACGATCACTT CCGGGAGCCC GGAATCCTTA TCGAACCAAC TGTGGATATT
CGCTCAGATG CGGGATGGGT ACAGCTTGTC CACGAGGATC TGAATACGCT GGAGCACAAT
TATGAGCAAT TGGTTGCCTG GATGCCAACA ATGTTTCAGG CACATTAACA TAAGTGTAGT
ATTGAGCATT TCCGTCAAAA GGAATTCCAA TTTACAGTTA GAAAAGAAAT AGAAGCGAGT
GATAGGAAAA ATAAATCAGG TGGATTGATA GTTTTTAAAG CCGAAGCGCA CTCACTGGTT
TCCATCTCCT CGGGACATTG CCGTAGAGAC GTCAATTCTT CGAGAAAGTT CCTGTTTCGG
TCTATTATCT GACACAGTGC TGCCTTTCAA CGTGGTCCAT TTCCGACATT TTTTAA
|
|---|
| Protein sequence | MDYNKNSLLV KFKFAFYVVI VNLKDSETDT PHYHVLSGMF SRPFCCCLSE ASIYWLRETI
FTVGVNVRLV PNSNQKMRSR NWLALVLGTS AILLGPVTAL FGRAALFRSH PRNATVDLRK
TSGFTLRAGS SNLPCVEYNG EEPPKRAVVL MDAFCPYHGL YLANAVRERF PDTAVVTVLS
DYLYAFLSAT EPESQAQWDS MRVPQDETTL AIWQSLPVAW QAVYCESDSG LESAEALREV
LGVACRDKPV MLSARRHKYK MNDRVKSVGL ESVKQKMCDS LDEAQAFAQE LGLSTGESLQ
AVIVKPFRGV ASESVHLCHD NAEIESAWNS ITSTAVFGCK GRHDSVLVQE FLQGCEYAVD
VVLRDGVPKV AAVWRYDKTQ ANGAPFCYVC TRLVDSHSDP QVPVVCDYVL DVLRALGVKW
GLSHNEVIVT SDRGPVLVEV NCRQHNMDFC PLTMACIGYN ALDMTVDALL GDEESWKVTY
PAFPALRAQG CMVHLINYAS GVLNEVKHLE EIDALPSVLN WEVYDHFREP GILIEPTVDI
RSDAGWVQLV HEDLNTLEHN YEQLVAWMPT MFQAH
|
|---|
| |