Gene PHATR_44200 details

Gene Information

• Locus tag: PHATR_44200
• Symbol: HSF3
• ID: 7204113
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 1290821
• End bp: 1292970
• Gene Length: 2150 bp
• Protein Length: 457 aa
• GC content: 48%
• Product: heat shock factor, DNA-binding
• Protein accession: XP_002186220
• Protein GI: 219113273

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.106256
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAGCAACTCC CCGTATTCCT ACGACCAACC TCGTTTGTTG TTGAAACCCC ACGGACCAAG 
TGTCTAGCAG CAATCCGCAA ATCACTCATA CTATTATAGA CATCTGACAA GCCACCATGG 
CGAAGACCAA TCCACAAAGC GTAGCGACTT CGATCGGCGA ACCTTCACCG GACGTTCCCA 
TCTTTCTACG GAGTGAGTAA AGCACTTTCC AGTGCGATAG ATTTATCGCC GTAGGATTTC 
TACGCGTTTC GTCGTAGACG ATCCGAAAAT GTCCGTTTGC AATGGAGCGA CCCGCGGAAA 
TGACGCTTGA GCAACGATGG AATGCAGGAA TGGACGAAGG ATACACGCAT TTTCTCTGTC 
TCATCTCACA CTTGCCTTCC TCCCATTCTT GATTTTACAG AAACCTACTA CATGATCGAT 
CAATGCGACG ATGAAATCGC CTGTTGGTCC GAGGACGGCA CCACGTTTGT GGTGAAAGAC 
CCAGATCGTT TCGAACGGAC AATCATCCCG CAATACTTCA AGCATTCCAA GTTTAGCAGT 
TTCGTAAGGG TACGTTGGTG ATTGCTGGCT TGCGGACGGA TTTCTAGGCT GTTCAATGCG 
CTCGTCAGGG AAATTTGGCC CCCTATGGGA ATCCCGGGAT TGGCACTGCC GAACGCGTTT 
GATTTCTCTG TGTTCTCACG CCTTTGTTCC TTTCCCCTTT TTTTTGGCAG CAACTTAACT 
TTTATTCCTT TCGCAAGATC AAGTACGCTG ACACTATTCG CATTGATCCC AAGCTGGAGG 
CCGAAACGGC TAATTATTGG CGATTTCGAC ACGAAAATTT CCAGAAGGGC AAACCGGAAC 
TTTTGACTGA GATTAAACGC ATGAACGGAC AGAAAGCCCC TACGTCTCCC TCGACTTCTA 
GTTCCAGCAG CGTTTCCACT ACGCAAGGGA ACAAAGTAGG TGTGACAGCA TCTGCCAAAG 
TAACGCCCGA TCCTGACGGT GCCAGCAAAG CTAGCAAGTC AGAAGTGCAG TCGCTTCAGA 
AACGCATCGA AGAAATGACC AAAAACATTG ATCAGCTTAC GGCTATGGTT CAGAAGGTTT 
CCCTAAAGCA GGAAGAGGAG GATCAAGTAG GATCCAAGCG TAAAAAGACG GAATTATTGA 
TCAAGACGGA AGACTTTCAA ACTGCTTTTA ACGGAGACCT TATGATGGAT GTCAATGGAG 
AATCGGATCA ATTGGTCCGT CCGGACGACA TGTTTAGTAA CATGGAGCTC GACGAGATTA 
TAACAGCGAC AGGAAACAAA GATCTATCCT CATCTGTGGA AGCGGAGGCA GCCGCTTTGT 
CCATAACACC ACCGTCCCCC GTTAAGTCAA CCGTACCCAT GATCCGCGAG ACTTCCGTCA 
ACACTCAGGT CAGCGACAAT GAGTTTGTGG ATCAGCTTTT CACCGCTTTC AACGAAGACT 
CAGATGATCT TTTGCAGATG GAACCACCTT CCTTTGGTCT CGACTCCGCC AATCGACCAG 
ATGCCGAACT CATGAAGAGA TTAAGTGACG CACTCATGTT TTTGCCTCGG GATATTCAAG 
TAATGATTGT TGAGCGATTG ATCGCCGCCA TTACTTCCAC CGAATCCCTC AAGCCCCTTT 
CCAAGGAAAA CACATCGAAG TCTTTGCAAG TGCAATCTGC TATGACTCCT TCGACATCCA 
TTCCGCAGAC TTTGGAAGAG GAGAAACAGG ACGTGCCCAT GCCCTTGGCT GCCGCCACTT 
TGGCCGCATT GTTGCACCAC TATAGTAGCC AAATTCAGGC CCAGCAACAG GGTAACAAGA 
GCAAAAAACC CCAGAACGTT CAAAAGTCTA TTCCGGTCAT TCCAGTACAT GCTTAAGTAG 
CACGAATACT GTGACACTTG TTTGGGGTTA TCGCACGGAA CACTGTGTGT GGGGCCTACT 
ACATATAGGC ACGCGCGTCA AGGGTACAAT TGGGAAATTA TGTATAGACC ACTTGGCGCG 
TCACCGATCT TGGAGTCGAG AGGGACGGTT TTATGCCTTA CACGGAGATG CTCGATCCTC 
TTCTTAGATA TCTTTCTCCT TTAGCCTTTC TCTAAGGTCA GCTTTTTACT TATATAACGA 
TTATATAGTA CACGCTATAA CGAATATAAG CTTTACAATC TATTTCTTTT 

 

Protein sequence

MQEWTKDTRI FSVSSHTCLP PILDFTETYY MIDQCDDEIA CWSEDGTTFV VKDPDRFERT 
IIPQYFKHSK FSSFVRQLNF YSFRKIKYAD TIRIDPKLEA ETANYWRFRH ENFQKGKPEL 
LTEIKRMNGQ KAPTSPSTSS SSSVSTTQGN KVGVTASAKV TPDPDGASKA SKSEVQSLQK 
RIEEMTKNID QLTAMVQKVS LKQEEEDQVG SKRKKTELLI KTEDFQTAFN GDLMMDVNGE 
SDQLVRPDDM FSNMELDEII TATGNKDLSS SVEAEAAALS ITPPSPVKST VPMIRETSVN 
TQVSDNEFVD QLFTAFNEDS DDLLQMEPPS FGLDSANRPD AELMKRLSDA LMFLPRDIQV 
MIVERLIAAI TSTESLKPLS KENTSKSLQV QSAMTPSTSI PQTLEEEKQD VPMPLAAATL 
AALLHHYSSQ IQAQQQGNKS KKPQNVQKSI PVIPVHA