| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43655 |
|---|
| Symbol | |
|---|
| ID | 7197509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 1114018 |
|---|
| End bp | 1115559 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178076 |
|---|
| Protein GI | 219112649 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGGG GAAGCAGGAC TCTGGATCCA ATACTGACTT TAAGGGTTCC CCCCTCGTCC
ACCGAGGACC ATCCATCCAC TCTAACTTCC ACAAAGGGCA ACCGATCCAC GATTTCTTCC
TTATGCTTTC TACCCACAAT AGACAACAGC TTGATAGCAG CATCACCGAT TCCACCACAG
TTAAAGGAAT CTTCATCAAA CGAACAAACA TCGTTGGTTT TAGAACACCG AATACACGAC
GAAGATGATG ACCAAGAAGA CGAGTCTTCG GACGACGATG ATGACTACGT TTCTAAATGT
CAAAGTATTA CTCAGGCCGA GCGAGTGCAC GATGCGGATG TCACATCCGA AGCGCGTCAC
GCAGCAGTCG TGGCATCGTT GCGGGGGCAA TGGCTCGCCA CATGTCACAC CAACGGCGAC
AGCATTCTGT GGGACTTGGG TCGGCAAAAA GCAACGAATC GCGTGGCTCC CAATCGGGGT
CCTGCAATTG CTCTTCGTAG GTGCATTGAA GGAGAGGATT CTGCTACAGG CCTCCATACA
AAAATATTGT TGCAAACGCG AGACGAGATG GGTACGGTCA CCTTGCACGA TGCCCAGGCT
CCTTGGCTGA GAGACGGTCT TTCCGAGACA GCTCGGGTGG AAACATGTTC CCAAACGTTT
TGTCAAGCGG CTCCCTGTCG AGGAGACTGG CGTTTGGTCG CTTTGCCCGC CTACGAGCAT
GATTGGGTAA CAGTCCGTGA TTGGCGTGTG CCACCTTCCA ATACCCCAGT TTTGTCCATG
CCCGCTTCCG CAGGACGCGC TGCCACTTAC GACGCGGGAG GGGTACACGA TATGCTGACG
AGTTTGGCAA TGTCTACCAC TTCAGAATAC GGCCGACCTA TTTTGGCATG TGGCATGGAA
AGCGGCAACG TCTTTTTTCA CGATTTAGCC ATGTTACGAG AAAAGTCGTC CATAGCTACA
TTTGCGCCAG ATGTCCTTTC CTCGGACGTC AAACTCTCCC AGGATCCCAT ATTGTCACTG
GACATGATGC CGTCTTCGTC TATTTCCTCC GCGGGAGCTT CAGTTGTGAC CATTGCTGGA
ATGGCTGGTG ATTCCTTAGA ATTGCTGAAT TTATTAGAAA ACGAGAGAGG CACAGTTGCG
GTGCTGAAAA CGACATTGAC AGACGCAAGC TCTTCGCTGG TCACTCGGCT GCGGTCTCGA
GTCGCAACTT GCCGAGTACA CGAAGGGAGC TACAGTAAAC CAGGAGTAAA TCTCTGTCGG
TTTCGTCCCG ACGGACGTAT TTTCGCCGTG GGGGGATGGG ATAGACGGTT GCGCATTTTT
GATCGATCTA GAAAGACGTC TCCTTTGGCG ATTTTAAAAG GGCACACTAC GGGCGTGAGC
GCCATGGATT GGGCAGCGCA TGCGGCCACC TCGGGTATAT TAGCGACGGG GGACTCGGAC
GGATGCGTCT ATGTTTGGCG GTGTTTTTCT TCGTAAGTCC TGTGAACTGT ACAGAGTGTT
GTCTATTGAA GCATGGTTAT TTCCTTGCAA GATCAATGAG CA
|
|---|
| Protein sequence | MDGGSRTLDP ILTLRVPPSS TEDHPSTLTS TKGNRSTISS LCFLPTIDNS LIAASPIPPQ
LKESSSNEQT SLVLEHRIHD EDDDQEDESS DDDDDYVSKC QSITQAERVH DADVTSEARH
AAVVASLRGQ WLATCHTNGD SILWDLGRQK ATNRVAPNRG PAIALRRCIE GEDSATGLHT
KILLQTRDEM GTVTLHDAQA PWLRDGLSET ARVETCSQTF CQAAPCRGDW RLVALPAYEH
DWVTVRDWRV PPSNTPVLSM PASAGRAATY DAGGVHDMLT SLAMSTTSEY GRPILACGME
SGNVFFHDLA MLREKSSIAT FAPDVLSSDV KLSQDPILSL DMMPSSSISS AGASVVTIAG
MAGDSLELLN LLENERGTVA VLKTTLTDAS SSLVTRLRSR VATCRVHEGS YSKPGVNLCR
FRPDGRIFAV GGWDRRLRIF DRSRKTSPLA ILKGHTTGVS AMDWAAHAAT SGILATGDSD
GCVYVWRCFS S
|
|---|
| |