| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_18239 |
|---|
| Symbol | |
|---|
| ID | 7197463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 877759 |
|---|
| End bp | 881537 |
|---|
| Gene Length | 3779 bp |
|---|
| Protein Length | 1058 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178026 |
|---|
| Protein GI | 219112549 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAC TGGATGTGAA GCGTTTTTTG ACGCGGCTCA ATAAGCTGCA GTCTCATTTT
CTCAAACACA AGTACGTAGA AAAATGAGTC GTTGTTGGAC GAAAAATGTG CATGCAGATC
TATCCCGAGT GGTTGGAGTT CACATTTTTG TCTAGGCATT CCAAGCTTTC GCTACGAACG
CTTCTCTGCC GTTCTGGTTT TCTCATTGTC ACTGCATTCC CGTACCTCTT TGCCTTCTCA
CCACTCTATC TCCTTGCTGC TTGTCGTTCA CAAAGTGCAA CGGTGTGGAA CAAAGCGGAC
TGCGTCGTCT TGCACCGTGG TCCCCTGGAC GATGATCAGC CCTATCTAAA GTCCGTAACG
CTGCACCAAT GGTTGTTTGG TTACGAACTT CCCGACACAA TCTTGTTGCT CACCAAAGAT
GGAAACGTTT GGTTGTTGGC GACGCAAAAG AAGCTTGATT TCGTCCGTCC CGCCCTCGAA
GCGCTACCGG AACTCAAGAC CGGCAAGTCT AAACTACAAG ATATCCACTT GCTGCTGCGC
AACAAACAGG ACGGCAATGA GGCGAACTAC GCTTCGCTCT GGAAAGAAGC GGGTCTGAAT
GTGGACGGTG GGGAAAAGAA TACGAAGCGC GTGGTCGGCG TCATTCTCAA GGAGCGAGCG
GGGAACAGCC AAGCCGGCGG GATTCTCGGT CCTTGGGAGG AAAAACTCAC CGCTGGTCAA
GAAAACGGCG TCGAGCTGGT CGACGTTTCT GCGGCACTGT CGTTCTTGAC TTCAGTCAAA
GACGAGAGTG AGCTTGATCT GCTGAAAAAG AGTTCCGTCT TGGCCAACAA GGTCATGAAA
CACGGTTACG TCAAGCGTAT GGAGGAGATT ATTGACTCGG AAACCTCCAT CACGCACGAA
GCCCTTGCCA AGTACGTGGA CGAGATCCTG GAAGATCCGA CGAAAATCAA TCTCAAAGTA
CCCCCTGAAG ATGTACAGGC CTGCTACTTT CCTATTGTCC AGTCAGGCGG CGCCTACGAT
CTCAAAGTCT CGGCGCAGTC ATCCGCTGAA AAGCTCAAAC ACGATGTTAT TCTGGTTTCC
ATTGGGGCGC GCTACAAATC ATACTGTAGC AACATGAGCC GGACCTTCCT TGTCGATCCA
CCCAAAAAGG TATCCGAAAC ATATGACGTC TTGCTCGAAG TGCAAGAAGC TTGTTTGGAA
GTTATGAAGG TTGGTCGCCA ACTCAAGGAT GTCTACGAAA CTGCCATAGC GTATTTAGAG
GGCAAGCCAG GCTCTGAGTA TTTGGTCGCC CATTTACCGA AGAACCTGGG CTTTGCGACA
GGCTTGGATT TTCGTGACAA TGCATTTCTA TTGACGCCAA AAAATACGGC GTCGTTCAAA
GTCGGTATGG TTTTTTGTTT GTCGATTGGT TTTCAAAATT TGACCCTGTC CGAATCCGAT
CGGGCTTCCA CACCCGACAA GAGTCAAGTA AGTAGGATTG GTTACAACAG TTTCTAGCCC
GCGATCAGTT GGCAAACATA TCTCATCTGC ATCCAAACGC TATCAACAGG TCAAGCAGCT
GTCGACGTAC GCTCTGGTCG TTTCTGACAT GGTCAGCGTG ACAACGAATA CGGCGGACGT
CATGACCAAA ATGGGCAAGA ACTTGACCGA TGTAGCATAC AATATCAACG AAGACGCCGA
CGAGGACGAC GAGGATGATG ATGACGATGG CGAGGAAAGT GTAGAAGCTC CGGACGCTCC
CGACGGTGAC GAGGAATATG CTCGCAAAGT GGCAAAACAG AGGGATGCCG CTGGAGTCCG
TCAGTCGTCG CGACTTGCCA AGGATGCGGC CGCCATGCAG GATGCGAATG AAGGCGTTGT
GGAGCGAGAA CGTCGCCAGA TCTCGCTCAT GACACGGCGT AATGAAGAGC GCCTTCGTGA
GCTAGCTCGC GCCAATCGCA AGAAGGGCGA CAACGATGAA AATGATGAAG TTGAAGAGTT
GGAAAGCTAC AAACGAACTC GCGACTATCC TGACAATGTG CAACCCAATC AAGTAAAGGT
AGATATGGCA AGCAAATGCG TTGTACTTCC GATTTGCGGA AATCCTGTCC CTTTTCACAT
AAGCACCATC AAAAATGTTG TTATGCCCGA CGCCGACAAT GCAACTTTAT TGCGCATCAA
CTTTTACACC GCCGGTATGG CTGTCGGCAA GGACGCTCCA GAAAATATGG TAAAATTGGT
GCAAAAGTAC GCTCCTTACG CTTCCTTTGT TCGGGAGATG ACCTTTCGTA GTTTGGATGG
ACACAATCTA ACTCTGGTAC GCCCAATATC GTTCGTTAAC CTCTACCAGG AATTGTTCTC
CTAACCACTA ATTTTGATGA CAGGCTTTCC GTCAGATATC AGAGCTTCGC AAGCGTGAGC
GGCAGAAGGA GCTATTACAA CAAGAGGAAG CCACGCTCGT GAAACAAGAA AAGCTGATTC
GAACAAAGAA CGAACGCGTT CCTCGACTGG CAGACTTAAC TATGCGCCCT GTCTTTGCGG
GTCGCAAGAC TCAAGGTAAC TTGGAGGCAC ATTCAAATGG TCTCCGTTTC ATTTCAACGC
GGAGTGAAAT TGTTGACATA ATGTACAACA ACATCAAGTA CGCTATCTAT CAACCATGTG
AAGGCGATAT CATGGTTTTG ATTCACTTTC ATTTGAAGAA CCCGATTATG GTTGGTAAAA
AGAAGCATCT TGATATCCAA TTCTTTACAG AAGTGATTGA AGCTAGCCAA GCTGTGGACA
ACGCAAGACG AAGCATGTAC GATCCTGACG AAATGGATGA TGAGCAGCGC GAACGTCAGC
TCCGAAAGAA GCTGAATCAG GCCTTCAAAG AGTTCTGCAA GAAAGTGGAC ATTGTTGCCA
AGAAAAATGG ACATGAACTT GAATTTGACA TTCCATATCG CGACCTCGGC TTTACTGGAA
ATCCGCACAA GGAAATGGTC AATATTGTAC CTACTTTGAA CTGCCTCGTG AATCTGACCG
AGACTCCTTT TTTTGTGGTG GATCTTGAGC ACGTTGACCA CGTTCATTTT GAGCGCGTCA
CGTATATGAG TAAAGCATTT GATATGGTGC TTGTAAACAA GGACTTTTCA AAGCAGCCTT
GGCGAATCGA TATGATTCCA AACGGAGACA AGGATGCAAT TCAGGAATGG TTGACGGACA
TGGAAATCAC ATATACTGAA GGTCCAATGA ACTTAAATTG GAAACAAATT ACAGCAACCG
TGAAGGATGA CGATCGCTTC TACATGAACA CTGAAGAAGA CGAAGTCACT GAAAAGGAAG
CCGGGTGGGA ATTTCTCCGT ATGTTTGGAC GGGAAGACGA AGAAGACGAG GATCCAGACG
AGGACGACTC AGAATTCGGT GATGACCGGG TGGAGAGCGA GGCCTCCGAC GAAGAGGAAG
AGGTTGATGA GTTTGTGTCT GATGATGACG ACGATGAAGA AGATTTCGAT GCTGATGAAG
ATCTGGAAGA GGAAGGGCTG GACTGGGACG AAATGGAGGC AGCTGCGGCA GCAGATGACC
GACGGAAACG AAACCGTGAC GAAGATTTGG ACCCCGAGCC TGCTAGAAAG CAGAATCAAA
GCAGCAAGCG TCGGCGCTAA GTCTACGGAT TGATGTTTTT GCGGAGCTAT CTTTGTACTT
CACCACCCGC TATGTCGCTT TTTGCGATGT GTAGTTTCGG TGAGATTGGA GAATTAAAAG
CCATTTTCTC TGCATTCAGC TTAATTGTAA TCGATCTGAA TACGGACATT GTCTACGAG
|
|---|
| Protein sequence | MAELDVKRFL TRLNKLQSHF LKHNATVWNK ADCVVLHRGP LDDDQPYLKS VTLHQWLFGY
ELPDTILLLT KDGNVWLLAT QKKLDFVRPA LEALPELKTG KSKLQDIHLL LRNKQDGNEA
NYASLWKEAG LNVDGGEKNT KRVVGVILKE RAGNSQAGGI LGPWEEKLTA GQENGVELVD
VSAALSFLTS VKDESELDLL KKSSVLANKV MKHGYVKRME EIIDSETSIT HEALAKYVDE
ILEDPTKINL KVPPEDVQAC YFPIVQSGGA YDLKVSAQSS AEKLKHDVIL VSIGARYKSY
CSNMSRTFLV DPPKKVSETY DVLLEVQEAC LEVMKVGRQL KDVYETAIAY LEGKPGSEYL
VAHLPKNLGF ATGLDFRDNA FLLTPKNTAS FKVGMVFCLS IGFQNLTLSE SDRASTPDKS
QQLSTYALVV SDMVSVTTNT ADVMTKMGKN LTDVAYNINE DADEDDEDDD DDGEESSSRL
AKDAAAMQDA NEGVVERERR QISLMTRRNE ERLRELARAN RKKGDNDEND EVEELESYKR
TRDYPDNVQP NQVKVDMASK CVVLPICGNP VPFHISTIKN VVMPDADNAT LLRINFYTAG
MAVGKDAPEN MVKLVQKYAP YASFVREMTF RSLDGHNLTL AFRQISELRK RERQKELLQQ
EEATLVKQEK LIRTKNERVP RLADLTMRPV FAGRKTQGNL EAHSNGLRFI STRSEIVDIM
YNNIKYAIYQ PCEGDIMVLI HFHLKNPIMV GKKKHLDIQF FTEVIEASQA VDNARRSMYD
PDEMDDEQRE RQLRKKLNQA FKEFCKKVDI VAKKNGHELE FDIPYRDLGF TGNPHKEMVN
IVPTLNCLVN LTETPFFVVD LEHVDHVHFE RVTYMSKAFD MVLVNKDFSK QPWRIDMIPN
GDKDAIQEWL TDMEITYTEG PMNLNWKQIT ATVKDDDRFY MNTEEDEVTE KEAGWEFLRM
FGREDEEDED PDEDDSEFGD DRVESEASDE EEEVDEFVSD DDDDEEDFDA DEDLEEEGLD
WDEMEAAAAA DDRRKRNRDE DLDPEPARKQ NQSSKRRR
|
|---|
| |