Gene PHATRDRAFT_54051 details

Gene Information

• Locus tag: PHATRDRAFT_54051
• ID: 7196932
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 2271855
• End bp: 2273838
• Gene Length: 1984 bp
• Protein Length: 605 aa
• GC content: 50%
• Product: pds-like2, phytoene desaturase-like protein
• Protein accession: XP_002176947
• Protein GI: 219110391

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.250882
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTACAGTTA ACAAACAAAT GCATTGAGTG GGCATGTAAC GAGCTCAAAT TTTGTGCGAC 
ATGCATAGTT CCCTCTTCTT TTACGCAGCT TTCTACTCTG TGTACAGAGG CGTTGTCGAT 
AATGTGTCTG CCCTACAGTT AATCAACCCG ATTTCACTTG TTAGACGAAA CGGTTCTTCG 
AGTTCAAGTA ATAGGCGTTT CCTTAGTCGG TGTTCAAAAA GTTCCGAGAG GGAACCTTGT 
AGAGTGGTTG TGGTTGGAGG AGGTTGGGCT GGTTTCACCG CAGCAGATAC TTTGGCAAGA 
GCATCTTCGA ATGTATCAGT TACCCTCTTG GATGCGTCAC AGAGGGGCCC CGGAGGACTA 
GCAGGTGGCT GGAGAACGCC CAAGACTGGC CGGCCCGTCG AAGCAGGAAT TCATGGCTTT 
TGGAGAGAGT ATCGTAATAC GTTTGCCATG ATTGAAAACA TTGGTTTAGA CCTTGACGAT 
GTCTTGACAA ATTTCACACC GTCAATTTTG GTTTCGGAAA ATGGACGCGT CGCCCTCGCA 
CCCGTCCTCG GCAATACAAT GGACAAGCCA AATCATCTAC AAGCCAACAA CCTGGACTGG 
TCTAATCCTC GCAGCCTGTT GGAGCAAATA GCGCCTTTGT TGCCGTCGCC TTTAGATGTT 
GCTTTGTTGG CTGATTTCAA TCCCGACTCG GAACTCTCCA TTGCCGACAG AATCAGCGGT 
ATCGGGTTGC TTGGTGCATG GGCCGACTTT GTACAAGAAG ACCGCGACTC TTGGGAAAGA 
TACGACAAGA TATCAGCTGA AAACTTGTTT CGCTCGATTG CATCGATTTC ACCAAACTTA 
TACCGCGACT TGGTCGCTCC TCTTCTTCAT GTTTTACCAA TGACCCCAGG ATACGACTGC 
TCCGCAGCTG CAGCGCTATC CTGCTTCCAC TTCTTTGCAC TACAATCTCG AGGTGCGTTT 
GATGTACGCT GGTGCCGTGG GAGCATTTCG GAACGCATCT TCAATCCCTG GGTTGAGAAG 
CTGAGGGAAA GCGGCAATGT TTGCATTCAA GGCTCCGCTC GGGTGACATC CATTGAACAC 
TATGGCGGAG AGTACACGGT AATGATCAAC AACAAGGTGT CCGTTACATG TGATGCTGTT 
GTTCTTGCCG TTGGCGCCAC AGCGGCAGGA AGATTGATTG ATTCGTGTCC ACCACTGCAG 
AAGATTCCGA ATCTAGCTTC AAAGTGGAAA GAACTTCGTG GTGTGAGCTG TGTAGCGGTT 
CGTCTCTTCT TTGCAGAACT TCCGCCGAGT CTTGCCTCTG CTATGAGCGA CTCTCCTGTT 
GTCGTATGCG GGCCGAATAT TGGGGGAGCC CCGCAACTCG TTGAGACTGG CTTTTGCATC 
TACGATCTGT CTCGATTGCA AGATGACTTC AAGGGCGGCG GTTTTGTGGG ATTGGAGGTC 
GATTTTTTCC GGGCGGATGC AATTGCAAAA ATGAGAGATG GCGACATTAT CAAGCTTACA 
TTGGATGCTG TCCAAACAGC ACTTGGAGTC GAAAGCATCG ACATGGAGCT CGTCGAAGAT 
TCGGCGGTTA TCAGAGCCCT AAATGCTGTA TCGCATTTTT GCGTCGGATC GGCAAGCAAG 
TCACCTCCCG TGAGGATTAC GAATGGGCTC TACATTTGCG GCGATTGGGT TGATCGAAGC 
GGGCATGCGT CGTGGAGCAC CGAGAAGGCT GTGGTTACTG GTTTACAGGT GGCCAACGCA 
ATTGACAGAG ACTTTGGATT GGATTGTAGG CAAGCAGTTA TTCCCGCTGC TGCCGATACC 
CCGCAACTCA TGGGCTTGCG AAAGGCTGCC AAGGCATGGC GCAATGCATC ACCTCCGCGA 
TCGTTCCCAG TGTCACCGTG GTTACCCTTA AAGCAGTTTC GCCGTCGGAT TGAATAGAAT 
AGTAGAGAGA ATTTTTTCAA CATCAAGTTT AATGGTGTAG TGTACATTAT CATACAGCTA 
GCCT 

 

Protein sequence

MHSSLFFYAA FYSVYRGVVD NVSALQLINP ISLVRRNGSS SSSNRRFLSR CSKSSEREPC 
RVVVVGGGWA GFTAADTLAR ASSNVSVTLL DASQRGPGGL AGGWRTPKTG RPVEAGIHGF 
WREYRNTFAM IENIGLDLDD VLTNFTPSIL VSENGRVALA PVLGNTMDKP NHLQANNLDW 
SNPRSLLEQI APLLPSPLDV ALLADFNPDS ELSIADRISG IGLLGAWADF VQEDRDSWER 
YDKISAENLF RSIASISPNL YRDLVAPLLH VLPMTPGYDC SAAAALSCFH FFALQSRGAF 
DVRWCRGSIS ERIFNPWVEK LRESGNVCIQ GSARVTSIEH YGGEYTVMIN NKVSVTCDAV 
VLAVGATAAG RLIDSCPPLQ KIPNLASKWK ELRGVSCVAV RLFFAELPPS LASAMSDSPV 
VVCGPNIGGA PQLVETGFCI YDLSRLQDDF KGGGFVGLEV DFFRADAIAK MRDGDIIKLT 
LDAVQTALGV ESIDMELVED SAVIRALNAV SHFCVGSASK SPPVRITNGL YICGDWVDRS 
GHASWSTEKA VVTGLQVANA IDRDFGLDCR QAVIPAAADT PQLMGLRKAA KAWRNASPPR 
SFPLA