Gene PHATRDRAFT_42443 details

Gene Information

• Locus tag: PHATRDRAFT_42443
• ID: 7196646
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: -
• Start bp: 73439
• End bp: 77097
• Gene Length: 3659 bp
• Protein Length: 1095 aa
• GC content: 56%
• Product: predicted protein
• Protein accession: XP_002177011
• Protein GI: 219110519

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0730577
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CACGGGCCAA CCAAGAAAGT CCCCGTGGTT CCAATCAGTC GGGGAGAGAA CGAAGCGGCA 
ATCGGTAGAT CGATCGAACA AACGATCAAT CGAACGATCG AACGATCCTT GACGACAAGG 
ATCGATTCCG TCAGAGTTTG CATAGGTATC CTACCGTTTC TGGACCCAAA TATTCCGAGA 
GGGAGAGGCT CGTTCCATCC GCACACCCAG ATACACACAA TCACGTACGA ACGGATCTCA 
TGGGAAATTG TCAGTCCGGA AACAGCACCA AGCACGTGCG CGTGGGAGAA GAGTTGCGTC 
CACGTTCGAC CGTCGGATCG TCGGTGCGGC ATGCTAGTCC CACGCCATCG CGTCCCGTTG 
CCGCGGACGG TACGGACCTC CCCATTTCTC CCGACAACGA GCCGTTGGAA TCCGCCCTCG 
AAAACAAGAT TCTGGAACAC TGGGCGGATG AAACCACACA GTCGTCCACC ACCGAGCCCG 
GATACGACGA AGTCGAAGAC GTCCTCATAC TCACCCGGAC TGCCGCTGAA ATGGCCAGTC 
GGAGTCCGAC GCGGCCTACC GCGGATGCGG ATCCCGATAA TGGTGCCGGA AGTCATCTCC 
GGCTTTCGCC ACCCCGCGAA TCTGTTCCTC ACGGTGCCGT TCTCTCCACC ACCGGCGATC 
CGGCAACCAC CACGACGTTG ACCTCGGTCA CCGCGATACC CATTACTCCG GATACACCGG 
GAGACGATCG AGACGATCGC AATACGCTCC TCCAAATGCC ACAACAACAA CATCCGTCCT 
ACTACGAGGA TGACGACCAA TCGATCGAAG TGGTTTCGGT CGCTTCCGGT GCGTCTTCCT 
CGCGACAGCG GCACACCGCA GGACGACTAC TGGTCTCTCC CCCGACCCTC CCGTCACCCC 
GACAGCGACA ACCGGAAGTC CTCTACGATA TGGCTCCCGC TAAACCGTCC CGTCCACCGA 
CACCCTCGCG ACAGCGCCTT CGACGGGGCG GGAGAGCCTA CCAAGCTCGT GTAGAAAAAG 
CCCGATACCT GCAAATGAAA CTCAACCAGT CCGGTGGATC CGGGACGGGA CCCACCAGCG 
GTGCCAACGC CTTGCGAGCG CTATCACCCT TTGGCGAATC CATCGCCGGC ATGAGTATCC 
TGGAAGACGA AGAACTATCC TGTACGGATC ACTCGGCGCG GTCCCGCTAT TCACTCAACA 
CCTCGTCACT ACTGGCCGCC AGCAACGAAC TGTTCAACGC CACCACCTCC CGCGGAGTCT 
TGTGGGCGGC CGCCGCGACC CAGGACCACA CACCCGTCAC AACCGTTACC TGGTCGCGGT 
GTTCCCCCAC ACTCCAATGT GCGGCACCGC CGCTCTACGT CGCCTTCGGA ACCGAAGCCG 
GCCTCGTGCA AGTGCAAGAG GCCCGGACCA CTCCACCGGT GCCGTCCTCA CTGGTGTTGA 
GTCGTGACCC CAAACACCAA GGGACCGCAA CTTCCAAGAA CAATACTTCC AAGCTCGGAC 
CGGTCGTTGC AGTACCCCGA GGATCCCGTA CACGTTCAAT CGATTTTTCT CGAAACGGAC 
AGTACCTCGC CGTCGGTGGC GACGACTGCA TTTGTGCCGT CTATCGAGTC ATCCACGAGC 
CAACCCCGGA TGACCCCGAC GGAGAATCCA AGTTGCGTTT GGAGCCGCTC GTGGAAATTT 
CCCGCGTGGA TCGAGTGTAC GCGGTGCAGT TTCGACCGGA CGGCAAATAT TTGGCCATTG 
GCGGTTTCGA CGGCACGGTC GCAATTGTCG CCACCTCGAA TTGGGAAGTG ACCGCCGAGA 
TTGCTCGAGA CGGACTCGTT TTGTGTCTGG ATTGGAGTCC AGACGGGAAG CTCCTCGCCC 
TCGGCGCCAG CGACAAATCC TGCGCCATCG TACACGCCGA CTCATCCTGG AAGATCCGAA 
CGGAGTTCCA CCGACCCGCA GATGTTGTAG CGGTAAAATG GCATCCCAAT GGCCGTCTCT 
TGGCCGTTGG CTCTTCGGAT GTGGCTATTG TGGAAGCCCA TTCCTGGATC ACCCGCCATG 
AAATTGATAC CAAACCCACC GCCGGCAGTC CCCTGCGTCG GTCCGTTTAC AAAGCTCACG 
CCCTTTGCTG GAGCCCCAAC GGAAGCTATC TCATGTTCGC GGGGACCAAC GGGACTCGTT 
GTGTTTTGTT GGAAACCAAA TCGTTTACCA TGTTGCACGA GATTCAGAGG GACGAAGTTG 
TGACGAGCGT CGCCTGGGGC GAGCAAATCA TTCGGGAAGG TATTCCACGG CGCTTCATGG 
CGATTGGTAG TGAAGACGGG TCCGTTGCTA TTATGCAAGC GGGTTTGGAA ACCCGGTCCG 
GAGCGTCTAC GGTTGGCGAC GACGTGTCTT CAATGTCGCA AATGTCCAAC GCAAGTTCGT 
ATTTTAGTAC CCGTGGAGAG TGGGAATTGC GCGAAGACGT CTTTGACGAT ATCGAAGGCG 
AGTTGGTCGA CGCCCCGGAC AATCGCGCAA AGGCCCAATC CGGAACCTGT GTTCGCGCCC 
TGGCTTTCTC ACGAGGTAGC AAGTCCCGGC CGTCCGCTTA TTTTGCCGTG GCCACTGATG 
ATTGCGTCGT CACCGTACGA TCCACCGTGG GCTGGAAAGT TGTGTCGCGG GCAGAATTCG 
CCCACCCGAT TCGTTGTCTC GCCTTTTCCA ACGGCAGTCG CTTTCTCGCC TTGGGTGGAG 
AAGACGCCAA ACTCAGCATT CTCGCTACTG TCCCGTCATG GACAGTAGTG ACCGATTTTT 
CCTTCGCCGC ACCGTTGACC TGCTTGTCGT TCAGTAAAAA CAACGAACGC CTCGTGGTTG 
GGAGCTTGGA CGGCACACTC ACTTTCCTGG ATCCCCGCAA GAATTGGCAA GTTGTGGGAG 
AGATTCACGA CAACGAGTCG CCGGTTTTAT CTTTGGACTG GAGCACCCAG AACTTGGTTA 
TTGGCCGGCA CGACGGATCG GTGCAGATTT ACGATTCGGT TCAAATTCTA CGTAATAGTC 
TTAAACCGTC GAAGCAGCTC GATGTGTCGG CACCGGCACG AGCCTTGGCC TTTGGGGTCA 
ATAGCCGATT CCTGGTGGTG GGTGGTGGCA ATGGTGTCGT TAACGTGTAC AGCTCCAAGG 
GTGGTTGGGT ACTCTGTCAC CAGATATCGG AAGGTGACGT GGGCATCGCT ATGTTAAGGT 
GGAGTCCAAC CGGACGATTC TTGGCGTACA CTGGAGAATC ACGGTTGTTC AAAGTTGTCG 
ATACCGTCTT TTGGGCCGAT GTGGAAGAGG CCGACGAGAT GATGGCGATT GCTAAATCCG 
TCCCTAGGGA ACAAGAGGAC AAGTCGCCCG CTCTAGCTTT TAGCCAGGAT GGCAATCTAA 
TTGCCTGCGG TGCCAACGTG TTCGACTGTC GACGGTGGGA GTCGGTTTTT GCACTCCAAC 
AGAAGAAAGT TGGACGCCAC AAGACCGGTA GTAACAGTGA CGGAGAACAC TCTAGTCTAT 
CCTCACGGGA AGAACAATCT AACGTGATGG TGATTGCCGA AGAATAGAAA GAGTATATGT 
TTGAGTTGAC GCTTTTAGCA ATGCACGGCA TTTTGTATCC ATAGAAGCCC AAAGCGGTAG 
GCCAGGCGAT GATGATTTAT TTCAATGTAT TGTTCCGTAA ACAAAAATGT TGCATTCCT 

 

Protein sequence

MGNCQSGNST KHVRVGEELR PRSTVGSSVR HASPTPSRPV AADGTDLPIS PDNEPLESAL 
ENKILEHWAD ETTQSSTTEP GYDEVEDVLI LTRTAAEMAS RSPTRPTADA DPDNGAGSHL 
RLSPPRESVP HGAVLSTTGD PATTTTLTSV TAIPITPDTP GDDRDDRNTL LQMPQQQHPS 
YYEDDDQSIE VVSVASGASS SRQRHTAGRL LVSPPTLPSP RQRQPEVLYD MAPAKPSRPP 
TPSRQRLRRG GRAYQARVEK ARYLQMKLNQ SGGSGTGPTS GANALRALSP FGESIAGMSI 
LEDEELSCTD HSARSRYSLN TSSLLAASNE LFNATTSRGV LWAAAATQDH TPVTTVTWSR 
CSPTLQCAAP PLYVAFGTEA GLVQVQEART TPPVPSSLVL SRDPKHQGTA TSKNNTSKLG 
PVVAVPRGSR TRSIDFSRNG QYLAVGGDDC ICAVYRVIHE PTPDDPDGES KLRLEPLVEI 
SRVDRVYAVQ FRPDGKYLAI GGFDGTVAIV ATSNWEVTAE IARDGLVLCL DWSPDGKLLA 
LGASDKSCAI VHADSSWKIR TEFHRPADVV AVKWHPNGRL LAVGSSDVAI VEAHSWITRH 
EIDTKPTAGS PLRRSVYKAH ALCWSPNGSY LMFAGTNGTR CVLLETKSFT MLHEIQRDEV 
VTSVAWGEQI IREGIPRRFM AIGSEDGSVA IMQAGLETRS GASTVGDDVS SMSQMSNASS 
YFSTRGEWEL REDVFDDIEG ELVDAPDNRA KAQSGTCVRA LAFSRGSKSR PSAYFAVATD 
DCVVTVRSTV GWKVVSRAEF AHPIRCLAFS NGSRFLALGG EDAKLSILAT VPSWTVVTDF 
SFAAPLTCLS FSKNNERLVV GSLDGTLTFL DPRKNWQVVG EIHDNESPVL SLDWSTQNLV 
IGRHDGSVQI YDSVQILRNS LKPSKQLDVS APARALAFGV NSRFLVVGGG NGVVNVYSSK 
GGWVLCHQIS EGDVGIAMLR WSPTGRFLAY TGESRLFKVV DTVFWADVEE ADEMMAIAKS 
VPREQEDKSP ALAFSQDGNL IACGANVFDC RRWESVFALQ QKKVGRHKTG SNSDGEHSSL 
SSREEQSNVM VIAEE