| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_31599 |
|---|
| Symbol | SSDH |
|---|
| ID | 7195958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 487840 |
|---|
| End bp | 489255 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | succinate semialdehyde dehydrogenase |
|---|
| Protein accession | XP_002177097 |
|---|
| Protein GI | 219110691 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTACAGG GAGTAGCCGT TGTGGACGGA AGCATCATCA ACAAGAACCC GGCTACTGGT
GAAGTTATCA GTCGGGTTCC GTGCACACCA CTCGATGAGC TGGATGTCAT GATTCGCGAG
GCCAAATTGG CGCAAAAGTC CTGGGCGACG ACTCCCGTGG CGAAACGTAT CCAACTATTG
CGGGATGGGC TGCAGGCAAT CGAAGCCAAG TCGGGACAGC TTGCTCGGTG TATTACGACC
GAAATGGGAA AGCCCATTGC CGAAGCGCGG GAAGAAGTCG AGTTTGCCGT CGGCAAAGCC
GAGTATTTGA CATTGTTGGA AGCTTCTTTA CAACCGCAAC AGCGCGGATC CTGTACGGTG
ATCCGCCAAT CCCTTGGTGT GGTGACCGTC CTGAGCCCTT GGAACTTTCC CGCCGACGAA
ATTTTGCTAC TGCTTTTGCC GGCGCTGGGC TCGGGCAATA CCGCGATTGT CAAACCTTCC
GAAGTCTCCC CGGAAACGGG TGCGATTGTC GTGAACTGCT TAGCACAGTT CTTACCAGAA
AACGTATTGC AATTGGCCCA AGGAGATGCA CAAGTGGGTG CACACTTGGT TTCGCACAAA
GACGTAGATA TGGTGGCCAT GACGGGAAGT AGTGCGACGG GCCAGAAGAT TTTGACTGCG
GCAGCTCCGC ATCTGAAACG ATTCGTTTTG GAAATGGGCG GAAAAGATCC CATGGTCGTG
TTTGATGACG CTGATTTGAA TCAAGCTGCA AAAGATGCCG TCTCTTACTC TTTATCCAAC
ACGGGACAAG TCTGTTGCTC CATTGAACGC ATTTATGTGG CACAGACCAT TTACCGCGAG
TTCCAGGAAC GCGTTACTCG CTGTGCTGCG GAGTACCACG TGGGCAACGG CATGGACGAA
AACGTCAATG TTGGTCCCAT GGTATCCATT CGACAACGCG ATCATGTAAA GCGACACGTC
GAAGATGTCA TTGCCAAAGG TGCCAAAGTC TTACACCAAA GTAAGATTCC GTCAACTGCC
AGTACAGAAT CCTCTTTCTT CCCCGTGACA GTTCTGGCGG ATGTGAAGGA GAACATGCAC
ATGTACCATG AAGAAACTTT TGGCCCCGTG GTCGCATTGA CTCCATTTGA CGGGTCCGAA
GAAGAAGCTA TTCGGCTGGC CAACGATACT GAATATGGAC TGGCGAGCTG CGTCTATACG
CAAGATATGG ACAGAGCACA GAGAGTAGCG AGCGCAATCG AGGCTGGGCA AATCGGTATC
AACTGCTACT CATTGGAAAA CATGGACGTG GCGTGCCCCT GGGTAGGCCA CAAGAAGTCT
GGTTTTGGGT ATCATTCCGG CCAGGAAGGG TTCCATCAGT TTTCTATTCC CAAAACGCTG
GTGTATGTTC CCAGTGCACA TAGTACGAAG GATTGA
|
|---|
| Protein sequence | MVQGVAVVDG SIINKNPATG EVISRVPCTP LDELDVMIRE AKLAQKSWAT TPVAKRIQLL
RDGLQAIEAK SGQLARCITT EMGKPIAEAR EEVEFAVGKA EYLTLLEASL QPQQRGSCTV
IRQSLGVVTV LSPWNFPADE ILLLLLPALG SGNTAIVKPS EVSPETGAIV VNCLAQFLPE
NVLQLAQGDA QVGAHLVSHK DVDMVAMTGS SATGQKILTA AAPHLKRFVL EMGGKDPMVV
FDDADLNQAA KDAVSYSLSN TGQVCCSIER IYVAQTIYRE FQERVTRCAA EYHVGNGMDE
NVNVGPMVSI RQRDHVKRHV EDVIAKGAKV LHQSKIPSTA STESSFFPVT VLADVKENMH
MYHEETFGPV VALTPFDGSE EEAIRLANDT EYGLASCVYT QDMDRAQRVA SAIEAGQIGI
NCYSLENMDV ACPWVGHKKS GFGYHSGQEG FHQFSIPKTL VYVPSAHSTK D
|
|---|
| |