| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3853 |
|---|
| Symbol | |
|---|
| ID | 7092549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | - |
|---|
| Start bp | 4220248 |
|---|
| End bp | 4221696 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643467138 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002364097 |
|---|
| Protein GI | 217979950 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.0518051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGT ACGGAGGTTG TTTCCTTGCT AGTCTTCCCT TGAAACAAAG CTCTCCCAGG
CCCGACCTTC GAATTCTGTC AGCCAGCGCT GAACTCGAAA AGCTTGGGCT GTGGCTCGTC
ACTGCGGTGG CGGGATGCAT TCTCCTCCTG TGGTTTGTTC CATCCGCCGC CGCGCTGGCG
CCGTCCGGAT GGTCGAAAAT GACCGCGAAT GCTGCGGCGG GGATGCTAGC CGCCGCGGGA
AGCCTTGCTC TGTCGGGGCC GCGGAGATCC TCCCTTATGC TCCGCCTCAG CGCTATTGCC
GCCTGGGCGG TGCTCGCGCT CGGCTGTCTC ACCCTGCTGG AATACGCCTA CGGTCCGATC
GGAATAGATC ACTGGCTCCC GAGGAGCTCG GTCGGGAGCA ACGACGGGCG CCCGTCGCCC
CAGACGGCGC TCGGCTTTGC GCTCGTCGGC CTGTGCCTGG CGCTCGGTTC GCATCCCGGC
CGCAAGCTGG GAACATTATC CGACCTTGGC GCGATTTCCT TGATTGCTCT CGTCCTCGTG
CTGGTCAGCG GTTATGTTTA CCAGATGGTC GAACTGGTCG GCCTCTCCAA GGCGAACCTG
AGTTCGCCGC AAACAGTCTT CTGTTTCTTC CTGTTGTCGT GTGTCATCGC GGCCCGACGC
GCGAGCGCCG GCGGATGGCT CTCGTTTTGG TTCGACGGCG GGATCGGAAG CCGCGTCGCA
CGCCTTGTCT TTCCCTTGGT CGTCTTGACG CCTTTTGTCG CGTTTGCCGC GGTCGGATAT
CTGGACAGCG CCGACATCTT TCCGGCGGCG TACACGCGCG CCGTCGAAAC CCCTATTATC
GTGCTGGCGG CGCTCGCCAT GATTGCGTGG ATGGGCCGGC TGACCAACAA ACTCGAACGC
GAACTGCGTT ATCAGTCGTT GAAAGACCAG TTGACCAATG TCCTGAACCG TCGAGGTTTT
TTTACCGTCG CCGACTACGC GATGAAGAAC GCAATTCGAC TAAAAACCGG ACTGACGCTG
TTCTATTTTG ATCTCGATGG CCTGAAGAAG GTCAATGACA GCTTAGGTCA CAAGGCTGGG
TCCGAATTGA TCACGCGCTT TGCCGATGTC CTCGTCGCCA CTTTCAGGAA GACGGATGTG
ATCGGCCGCA TCGGCGGAGA CGAGTTCGTC GTGCTGGCGT CCGATAGTTC CGGGACCGCC
GAGGCGATGC TTGCGCGCAT GGCGGCAATC GTCGCCGCGC GCGCAATGTC TGACCCCCTC
CTGGAGATTT CCTACAGCAG CGGATACGCC GAAACCTCGT CCCCCGCCAC GGTGGCGATC
GATGATCTGA TCCATCAGGC CGACAAGATG ATGTATGAAC GAAAGCAGTT GAAAAAGGCC
GCAGGCTCGA CAACCGGCGC CCTCGCCAAG ACGAATCGCC TGCTCCCGTC GCCTAGCGCC
ACCGGTTGA
|
|---|
| Protein sequence | MPPYGGCFLA SLPLKQSSPR PDLRILSASA ELEKLGLWLV TAVAGCILLL WFVPSAAALA
PSGWSKMTAN AAAGMLAAAG SLALSGPRRS SLMLRLSAIA AWAVLALGCL TLLEYAYGPI
GIDHWLPRSS VGSNDGRPSP QTALGFALVG LCLALGSHPG RKLGTLSDLG AISLIALVLV
LVSGYVYQMV ELVGLSKANL SSPQTVFCFF LLSCVIAARR ASAGGWLSFW FDGGIGSRVA
RLVFPLVVLT PFVAFAAVGY LDSADIFPAA YTRAVETPII VLAALAMIAW MGRLTNKLER
ELRYQSLKDQ LTNVLNRRGF FTVADYAMKN AIRLKTGLTL FYFDLDGLKK VNDSLGHKAG
SELITRFADV LVATFRKTDV IGRIGGDEFV VLASDSSGTA EAMLARMAAI VAARAMSDPL
LEISYSSGYA ETSSPATVAI DDLIHQADKM MYERKQLKKA AGSTTGALAK TNRLLPSPSA
TG
|
|---|
| |