| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2881 |
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| Symbol | |
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| ID | 7092797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 3168982 |
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| End bp | 3172428 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643466191 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002363160 |
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| Protein GI | 217979013 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0619949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGGA AATTCTGGCT CCGACTCTCG ATCAGCGTCA TCGGCGCCCT GGCGCTCGGG
GCGCTGATCT GGCTCGCGGC CCCGCTTATC CCGCTGCGCG GCGCCTATCC GCTCGAGGAG
CCGCTTCCGC GCGCAGCGCT GATCGCCGTG ATCTTCGCGC TGATCGGCGG CGCCGGCCTT
TACCGCTTCA ATCGCCGCCG CAAGGGCGCG GCGCGGATCG CGCAGAGCCT CACTGCCGAG
GGACATCCCG GCGACGACAG CGACGCGCCC GTCCTCGCCG AGCGCATGAA GGAGGCGCTT
TCGGTTTTGC GCGGCCGCGG CGGACGGGCG AACTATCTCT ATGACCTGCC TTGGTATGTG
CTGATCGGGC CGCCCGGCTC CGGCAAGACG ACGGCGCTTA TCAATTCCGG GCTCGAATTC
CCGCTTGCGG GCGGCGTCAA GCCGGGCGCC GTCAAGGGGG TCGGCGGCAC GCGCTATTGC
GACTGGTGGT TTACCGAGGA CGCCGTTTTG ATCGATACGG CCGGGCGCTA CACGACGCAG
GATTCCGACG CGCGGGCGGA CCAGAAAAGC TGGCTCGCCT TTCTCGACCT GTTAAAGAAG
AACCGCCCGC GCCAGCCGAT CAATGGCGTT CTCGTCGCGA TCAGCCTCGA AGATATTTTG
ACGCTGCCCG CCGAAGAGGT CGCCGCCCAT GCGGCGGCGA TCCGGGCCCG GCTGATCGAA
CTGCATCAGC GGCTCAAGGT CGACTTCCCG GTCTACGCCG TCTTCACCAA GGCCGACCTC
CTGATCGGCT TCATGGAGTT TTTCGGCGAT CTTGACGAGG CCGGCCGGCG CCAGGTCTGG
GGCGCGACCT TTGCGACGAT GGACAAGAGC AAATCCATGC TCGCCGAGGC GCCATTCGAG
TTCAAGGCCC TGCTCGACCC GTTGAGCCGC ATCGCGCAGA ACCGGCTCGA CGAGGAGAAG
GACCCCGCGA CCCGCGTGCT GGCTTTCGGC TTTCCGGCCC AAATGGCTGC GCTGCAGGCG
CCGGTCATCG GCTTCCTCGA CGCCATCTTC GATCCCGCCC GCTACAAGAT CCGGGCGGCC
CTGCGCGGCT TTTACTTCAC CTCCGGCACG CAGCAGGGCA CGCCCATCGA CCAGCTGCTC
GGCGCGCTCG CCAAGGGATT CGGCGCCGAG GCGGTGGGGA CGCCCGTCTA TTCGGGCCAG
GGTAAGAGCT TTTTCCTGAC CGACCTCATC AAGAAAGTCG TCATCGGCGA AGCCGGCTGG
GTCTCGACCG GCCGCGGCAA CCGGATCGTC AAGATGGCCG CCTTCGCGAG CCTCATCGTC
GCCGCGCCGC TGCTGATCGG CGCCTGGTGG GTCAGCTACG CCCGCAATGT CGATCGCATC
GGCCAGACCG TGGAGGCGGC GCAAAAATAC CCGGCGGCGT CGCGCGGGGT GGGCGACGCG
GACGTCGTCA GCGACCGCGA TCTCGCCAAG GCCCTGCCGG CGCTGCACGC GCTGCGCTAC
CTGCCGGGCG GCTATGCCGA TTCCGACGCC GAGCAAATTT CCGGCGGCCT CGGGCTCAAT
CAGACGGCGC GGCTGCGCTC GGCGGCGGCG AGCGCTTATG GCGTCGGTCT CGAACGCATG
CTGCGCCCTC GCCTCGTCTA TCGGCTGGAG GAGCAGCTCG AGGCCAGCGC CAATGATCCG
GCCAATCTGT TCGACGCATT AAAAGTCTAT CTCATGCTCG GCGGCCTCGA GACCGTGGAC
CGCCAGCTAT TGGTCAATTG GATGCAGCGC GACTGGTCGG AAACGCTCTA TCCCGGCCCC
AAGAACAGCG AAGGGCGCAA GGAGCTGGAG CAGCATCTTC TCGCCATGCT CGATCTTGAG
ACCGGCCATG GCGCTTTCGT GCAGCTGAAC GGGCCGCTCG TCGAGAAGGC GCAGGCGGCG
CTGGCGCGCG AGACCGTCGC CGACCGGGCG TTGCGCATCA TGGCGGCGCG GGCCAAAGCC
TCGCTGCGCC CGGACTGGTC TGCGGCCAAG GTCGGCGGCG CCGGCGCCCT CGTCGTCTTC
GAACCGTCGA TTGAGGCGAT CAGCGTTCCC TATTTCCTGA CCCGGACCGG CTATGAGGGT
TTCGTCAAGG CGCTGCCGTC CGTGGTCGAG GAGATGGCGC GCGACCGCTG GGTGCTCGGC
GCGGCGGGCG AGACGCCGGA GATCTCCGCC CAGTATGACC ATCTGCGCGA AACGCTCGTC
GACGCTTATG CGAAAAGCTT CATCGACGCC TGGCGCGAGG CGATCGGCAA GCTCAAGATC
CGCAAACTGA CGGCGGAGCG TCCGTCCTAT CCGCTGCTGA CCGCAGCGTC CTCTGTCACA
TCGCCCTTCA TCCGCCTTCT GGAATCGATC CGCGACGAGA CGCAATTGTC GACGAGCGAC
GGCGACGCGC CGACCAAATC GGCAAGCGTC GAGGGCGAGG CCATGGCTGT TGTCGGAGGC
GACGGCAAAA CGCCCGCGCA GATGATCGAG GCGGCGCTGG CGCCCTATCA CAAGCTTGTC
GAGGGCGATC CCGGCCAGCG TCCGATCGAC CGGACGCTGT CGGAGCTTAA TGAGATCCGC
GTCAATCTCA GCCGCCTCGC GACCAATAAT GCCCCGACAG GCGAAATCGC CGAACGGATC
GAGAGCGGCG TCGGCCGGCT CAAGGCTGCC GCCGCGGCGC TGCCGCCGCC CTTCGCGGGG
ATGATGGAGC AAACTGGCTC CGACATTCTG CGCGAAGTCA CCGAGTCCGC CGTCGCGCGC
ACGGTGGCGA AGCTGCGCGA ACAGGTGACT TTCACCTGCC AGGAAAAGAT CGGCGGCCGC
TATCCCTTCA CGAAAGACGC CGAGCGCGAC GTCGAACTCG ACGATTTCGC CCGCATGTTC
GGGCCGAAAG GGCTGATCGA CCAATTTTTC GGGACCTATG TGCTCGCCTT CGCCGACACC
AGCGGGCCGC AGTGGAAATG GCGCGACGAT AGCCCCCTGG CCAAGGAGTT CGCGCCCTCT
GCCCTCGCCG ACTTCAAGAT CGCCGCCGAT ATCCGCGCCG CCTTTTTCGG TGCGGACCGT
TCGGACCCCT CGGCGCCGGC GTTCTCCTAC GCCGTCACGC CGCCCCCGGT CAGCGGCGTC
CGGCTCGAAA TCGACGCGAC GCTGATCACC GGCGGCCAGG GCGCGACCAC CGTGCAATGG
CCGGGGACCG CCGAAAATCA CCGCACGCTG TTGACCATGC GCTCGAATGC GGCGCGCCCG
CCGATGCTGC TGCAGTCCGG CGTCTGGTCG GTCTACCGCC TGCTCGATAC GGCGAAGCTG
AATGCGGACG GGACGCAGGC GACCTTCAGC CTCGGCGGCC GCGATCTCGC CTTCCGCTTT
GTCTCAACGC CGGCCAATGG CGACGCCGGG ATGCGGCCGC TGAACATCGC CCAATTGCGC
GCCTTCCACT GTCCGGGCGG GAGCTGA
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| Protein sequence | MNRKFWLRLS ISVIGALALG ALIWLAAPLI PLRGAYPLEE PLPRAALIAV IFALIGGAGL
YRFNRRRKGA ARIAQSLTAE GHPGDDSDAP VLAERMKEAL SVLRGRGGRA NYLYDLPWYV
LIGPPGSGKT TALINSGLEF PLAGGVKPGA VKGVGGTRYC DWWFTEDAVL IDTAGRYTTQ
DSDARADQKS WLAFLDLLKK NRPRQPINGV LVAISLEDIL TLPAEEVAAH AAAIRARLIE
LHQRLKVDFP VYAVFTKADL LIGFMEFFGD LDEAGRRQVW GATFATMDKS KSMLAEAPFE
FKALLDPLSR IAQNRLDEEK DPATRVLAFG FPAQMAALQA PVIGFLDAIF DPARYKIRAA
LRGFYFTSGT QQGTPIDQLL GALAKGFGAE AVGTPVYSGQ GKSFFLTDLI KKVVIGEAGW
VSTGRGNRIV KMAAFASLIV AAPLLIGAWW VSYARNVDRI GQTVEAAQKY PAASRGVGDA
DVVSDRDLAK ALPALHALRY LPGGYADSDA EQISGGLGLN QTARLRSAAA SAYGVGLERM
LRPRLVYRLE EQLEASANDP ANLFDALKVY LMLGGLETVD RQLLVNWMQR DWSETLYPGP
KNSEGRKELE QHLLAMLDLE TGHGAFVQLN GPLVEKAQAA LARETVADRA LRIMAARAKA
SLRPDWSAAK VGGAGALVVF EPSIEAISVP YFLTRTGYEG FVKALPSVVE EMARDRWVLG
AAGETPEISA QYDHLRETLV DAYAKSFIDA WREAIGKLKI RKLTAERPSY PLLTAASSVT
SPFIRLLESI RDETQLSTSD GDAPTKSASV EGEAMAVVGG DGKTPAQMIE AALAPYHKLV
EGDPGQRPID RTLSELNEIR VNLSRLATNN APTGEIAERI ESGVGRLKAA AAALPPPFAG
MMEQTGSDIL REVTESAVAR TVAKLREQVT FTCQEKIGGR YPFTKDAERD VELDDFARMF
GPKGLIDQFF GTYVLAFADT SGPQWKWRDD SPLAKEFAPS ALADFKIAAD IRAAFFGADR
SDPSAPAFSY AVTPPPVSGV RLEIDATLIT GGQGATTVQW PGTAENHRTL LTMRSNAARP
PMLLQSGVWS VYRLLDTAKL NADGTQATFS LGGRDLAFRF VSTPANGDAG MRPLNIAQLR
AFHCPGGS
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