| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2858 |
|---|
| Symbol | |
|---|
| ID | 7093021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 3142064 |
|---|
| End bp | 3142927 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643466168 |
|---|
| Product | Squalene/phytoene synthase |
|---|
| Protein accession | YP_002363137 |
|---|
| Protein GI | 217978990 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0793384 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAG CTTTGAGCGC CCTCGACGCC GATTACGCCT ATTGCGAGAC GATCGTCCGC
CGCGACGACC CGGACCGCTG GCTGGCGAGC CTGTTTCTCC CCGAAGGCAA GCGCCGTTAC
GCGCATGCGC TCTATGCGTT CAGCCTCGAA ATCGCGCGGG TGCGCGAGGT CGTCTCCGAG
CCGATGCTGG GCGAAATTCG CTTTCAATGG TGGCGCGAGG CGCTGGAGCA GCCGGATCGC
GAGGATGTGC GCGCAAACCC TGTCGCCGCC GCCGTGACCG ACGTCCTGGT CCGCTTTGAT
TTGCCGAGCG AACATTTGCT TCAATTGATC GATGCGCGGC AGTTCGATCT GTTCGACGAT
CCGATGCAGA GCGTGGACGA GCTTGAGGCC TACGCCAGGG CGACCTCGTC CAATCTGTTC
TGCCTGACGC CGATGATCCT TGAGCCCGAG ACCCCCTCGT CCGGATTCGG CGCCGCCAGC
CATGGCGGGA CCGCTTATGC GCTGACTGGC CTCTTGCGCG CCTTTCCGTG GCACGCCGCG
CGCGGCCAAT GTTACGTTCC GCTCGACATT CTGCGCCGCC ACGGGCTGGA GCGCGCGGAT
GCTGTCTCGG GGCGGGCGTC GCCGGCCCTT TTGGCCGCCC TTGAGGAGTT CCGCGCTCTC
GCCCGGTCGC ATCTTGAGAT TTTCCTGACC CGGATCGAAG GGCTGCCCGA TTTGGCGCGC
CCAGCCTTCC TGCCGATCTG CCTCTGCGAG CCCTATCTGA GGCTCATGGA GGGGAAGTGC
TACGATCCTT TCAAGACCAA TGTCGTCCTG CCGCAATGGC GCCGGCAATG GGCGCTCTGG
CGGGCCGCTA AGCACTGGCA GTAA
|
|---|
| Protein sequence | MSEALSALDA DYAYCETIVR RDDPDRWLAS LFLPEGKRRY AHALYAFSLE IARVREVVSE
PMLGEIRFQW WREALEQPDR EDVRANPVAA AVTDVLVRFD LPSEHLLQLI DARQFDLFDD
PMQSVDELEA YARATSSNLF CLTPMILEPE TPSSGFGAAS HGGTAYALTG LLRAFPWHAA
RGQCYVPLDI LRRHGLERAD AVSGRASPAL LAALEEFRAL ARSHLEIFLT RIEGLPDLAR
PAFLPICLCE PYLRLMEGKC YDPFKTNVVL PQWRRQWALW RAAKHWQ
|
|---|
| |