Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msil_2322 |
Symbol | |
ID | 7090306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylocella silvestris BL2 |
Kingdom | Bacteria |
Replicon accession | NC_011666 |
Strand | - |
Start bp | 2517000 |
End bp | 2519807 |
Gene Length | 2808 bp |
Protein Length | 935 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643465645 |
Product | TPR repeat-containing protein |
Protein accession | YP_002362615 |
Protein GI | 217978468 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0205826 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTGC CAAAATATGA AAGCGCGGCT GTTTCGGGTC AAGGCCATAG TCGCGACAAA GCGCTGCTGC AGGTCGCGAT TACGCGGGCG TTCGCCTTTC TGAATTCCGG CCAACCGGAC GAGGCGCTGG CGGAGCTCGG CGGACACGCC CAGCGGGCGG CGCGGAGCGA TCTCGCCTGT TATGTCTTCG GGCTGATTTG CTTCAACGCC GGGGATCTGC GCGAGGCGCT GATCTGGTTC GAGCGCGCGC TCGCCTTGAA GCCCGATTAT TTCGAGGTGC TCAGCGCGCG CGCCATCGTG CTGCAAAGAC TCGGCCAGCC CGAGGATGCG CTCGAGGCTT TTGAGGACAT CCTGAAACTG CGCCCGAACG ACGCCGACGC GCTGTTCAGC ATCGGCGTCA TTTTACAGAG TCTTGGCCGC ATGAACGAAG CGCTCGTCTC CTATGAAGGC GCTTTGCGGG CGCAGCCCAA GCATTGCGAG GCGTTGACCA ATCGCGGCGC TCTGCTCGAA CGATTTGGCC GTCTTACTGA GGCGCTGTCC TGTTTCGAAG CGATCATCGC GCTGCGCCCC AACAATGGCG GAGCCCTCTT CAACAAGGGC TCGGTGCTGC AAAAGCTCGG CCGCAACGAA GACGCGCTCG CCGCCTATGA GGCGGCGGCG CAATCCGGGC CGCCCGATCC CGAGACCGAG CTCAATCGCG GCAATGTGTT GCAAAAACTC GGACGGCTCG ATGAAGCGAT CGTCTGCTAC GACCGCGCAG CGCGCCGGCC TGGGGGTTAT CCGCAGGCGC TCTACAACAA GGGCATTGCT TTGCAGGCGC TGGGCCGGCG GTCGGCCGCC CTTGCCGCTT ATGACGCGGC TCTCGTGCTC GACCCCCGCT ACTGCGAGGC GATCTGCAAT CGCGGCAATC TGTTGCATGA ACTCGGCCGG CTCGAGGACG CCTATATGGC CTATGCCGCG GCGCTGAAAA TCAGGCCCGC GTTCCTGCCG GCGCTGACCA ACCGCGCCAA TATCTGCCTG CAATGGGGCC GCCTCGACGA AGCGATCCGC CATTGCGACG AGGCGTTGCG GCATGATCCA AAATACCCGC AGGCGTTGGG CTTGCGCGGC GCGGCGCTGC ACCGCCTTGG GCGGCTCGAG GAGGCGCTCG TTTCGCTCGA CCTTGCCGTG TCCGTCCGAC CGGCCGCGCC GGAGGCCTGG CTCAATCGCG GCAACGTCTT GCAGGAGATG GACCGGCTCG CCGACGCCGT CGCCTCCTAC CATGAGGCGC TCCGGCTTTC CCCTCATTAT CCGGAGGCGC TGTCAAGCCT TGGCGTCGCT CTGAAGGAAC AGGGGGATGT CGACGAAGCG CTTGCATGTT TCAACGAGGC CATACACTAC AAGCCAGACT ATCCAGATGC GCGCAACAAC AGGGCCGGAG CGCTGTTGCT GATGGGGAGG CTGAAAGAAG GTTTTCGCGA CTTTGAAAGT CGTTGGGATC GATCCAACGC GCCGCCGAGA CCCATCATTC CCGCGGCGGC CCGGTGGACC GGCGAGGATC TGACGGGCAA AAAAATTCTC GTTTACGATG AACAGGGGCT TGGCGATCTC ATCCAGTTCT GCCGCTACAT TCCCTTGCTT GAGGAGCGCG GGGCTGAAGT CACCCTGTTG TGCCGCAGGA CCATGCAAAG GCTGCTGCGC AGCCTGGATT CCCGCGTTCG GATGATCGAC TCCCTGGACC CTCAAGACCG GTATGATTTT GCATCCGCCT TGCTCAGTCT GCCAGGCGGA TTCGGCGCGG AGCTCGAAAC GATTCCGGCG CAGACGCCTT ATCTTTTCGC GGAGCCCCAG GCTGTCGCCC AGTGGTCGCA GCGCATCGGC CCCGAAGGAT TTCGGATCGG CATATGCTGG CGCGGAAATT CCGCGATCAA TTTGAAGCGC GGCTTTTCCC TGGACTGCCT CGGCCCGATC GCCGCGATCG AGGGCGCGCG CCTGATCGGC CTGGTCAAGG GCGAAGGGCC GATGGAAATC GAGACGCCGC AGGGATCGGC GCGCATCGAA GGGCCGGGGC CCGATTATGA CGCAGGGCCG GACGCCTTTA TCGATTGCGC CGCCGTGATG GAATCTCTGG ATCTCGTCAT CACGTCGGAC ACCGCCATAG CCCATCTCGC CGGCGCGCTT GGACGGCCTG TGTTCGTCGC CCTGAAACAT GCGCCGGACT GGCGATGGCT GCTGCATCGT CTAGATTCGC CATGGTATCC GACGATGCGG TTGTTCCGCC AAAAGGAGCG CGATCAATGG CGGCCCGTTT TCGATGAAAT GGCTGCGGCG GTCGGCGCGC TTGTCCGCGG CGTCGGCAAT TCTATCCCGC CGCCCGATTT GTCTTCCAGC GATCAGAGCG TCGCGGCAGG ACCGCACGCG CTCCAACCTG AAGACCCGCC GGCGCTCATC GCCATACCGG CAGGCGTTGG CGAACTCATC GACAAGATCA CAATTCTTGA GATCAAGGAG CGCCGCGTCG ACGATCCGGC CAAGCTGCAC AACATACGCT TCGAACTCGC CCTGTTGCGC AAGCTTCGAG ATGAGCACGA TCTGTCGGAC CCTGCGCTCG CGCGTCTTGA GGCGGAGTTA AGAAAGGCCA ATGAATCTCT GTGGGATGTC GAAGACGCAT TGCGCTCGTG CGAATCGAAG AACAAATTCG ACGAGGAGTT TGTCTCTCTC GCGCGACTTG TCTACACCTG CAACGACAAG CGCGCTCATG TGAAGAAAGA GATCAATCTG TTGTTCAATT CCGCCATTAT CGAGGAGAAA TCCTACGCCC GCGCGTGA
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Protein sequence | MSVPKYESAA VSGQGHSRDK ALLQVAITRA FAFLNSGQPD EALAELGGHA QRAARSDLAC YVFGLICFNA GDLREALIWF ERALALKPDY FEVLSARAIV LQRLGQPEDA LEAFEDILKL RPNDADALFS IGVILQSLGR MNEALVSYEG ALRAQPKHCE ALTNRGALLE RFGRLTEALS CFEAIIALRP NNGGALFNKG SVLQKLGRNE DALAAYEAAA QSGPPDPETE LNRGNVLQKL GRLDEAIVCY DRAARRPGGY PQALYNKGIA LQALGRRSAA LAAYDAALVL DPRYCEAICN RGNLLHELGR LEDAYMAYAA ALKIRPAFLP ALTNRANICL QWGRLDEAIR HCDEALRHDP KYPQALGLRG AALHRLGRLE EALVSLDLAV SVRPAAPEAW LNRGNVLQEM DRLADAVASY HEALRLSPHY PEALSSLGVA LKEQGDVDEA LACFNEAIHY KPDYPDARNN RAGALLLMGR LKEGFRDFES RWDRSNAPPR PIIPAAARWT GEDLTGKKIL VYDEQGLGDL IQFCRYIPLL EERGAEVTLL CRRTMQRLLR SLDSRVRMID SLDPQDRYDF ASALLSLPGG FGAELETIPA QTPYLFAEPQ AVAQWSQRIG PEGFRIGICW RGNSAINLKR GFSLDCLGPI AAIEGARLIG LVKGEGPMEI ETPQGSARIE GPGPDYDAGP DAFIDCAAVM ESLDLVITSD TAIAHLAGAL GRPVFVALKH APDWRWLLHR LDSPWYPTMR LFRQKERDQW RPVFDEMAAA VGALVRGVGN SIPPPDLSSS DQSVAAGPHA LQPEDPPALI AIPAGVGELI DKITILEIKE RRVDDPAKLH NIRFELALLR KLRDEHDLSD PALARLEAEL RKANESLWDV EDALRSCESK NKFDEEFVSL ARLVYTCNDK RAHVKKEINL LFNSAIIEEK SYARA
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