Gene Msil_0105 details

Gene Information

• Locus tag: Msil_0105
• Symbol: rpsD
• ID: 7090422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylocella silvestris BL2
• Kingdom: Bacteria
• Replicon accession: NC_011666
• Strand: +
• Start bp: 96550
• End bp: 97167
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643463439
• Product: 30S ribosomal protein S4
• Protein accession: YP_002360449
• Protein GI: 217976302
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 49
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACAAAGC GCGCAGAAGC AAAATATAAA ATCGACCGAA GGATGGGCCA GAATATCTGG 
GGCCGTCCGA AAAGCCCCGT CAACCGCCGC GAATATGGCC CCGGTCAGCA CGGCCAGCGC 
CGCAAGGGCA AGCTCTCCGA CTTCGGCACG CAGCTCAAGG CCAAGCAGAA GCTCAAAGGC 
TATTACGGCA ATATTTCGGA AAAGCAGTTC CGCAAATATT ACGCCGAAGC CATTCGCCTT 
CGCGGCGACT CGGGCGACAA TCTGATCGGG TTGCTGGAGC GCCGGCTCGA CGCGGTGATC 
TACCGCGCCA AATTCGTGCC GACGGTGTTC GCCGCGCGCC AGTTCGTCAA CCATGGCCAC 
GTCAAGGTCA ATGGCAAGCG CGTCAACATC GCTTCCTACC TCGTCAAGGT CGGCGATGTG 
ATCGAGGTCA AGGAATCCTC GCGCGAGATC CTGATCGTGC TCGAGGCCAA GCAGCTCGCC 
GAGCGCGACG TGCCGGATTA TTATGAGGTC GATCATAATA AGATGACGGC GAAGATCACG 
CGCATTCCGC TGCCGGCGGA CGTGCCCTAT CCGGTTCTGA TGGAGCCGAA TCTGGTGATC 
GAATTTTACT CGCGCTAA 

 

Protein sequence

MTKRAEAKYK IDRRMGQNIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGT QLKAKQKLKG 
YYGNISEKQF RKYYAEAIRL RGDSGDNLIG LLERRLDAVI YRAKFVPTVF AARQFVNHGH 
VKVNGKRVNI ASYLVKVGDV IEVKESSREI LIVLEAKQLA ERDVPDYYEV DHNKMTAKIT 
RIPLPADVPY PVLMEPNLVI EFYSR