| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2160 |
|---|
| Symbol | |
|---|
| ID | 7085966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 2568190 |
|---|
| End bp | 2570958 |
|---|
| Gene Length | 2769 bp |
|---|
| Protein Length | 922 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643461061 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002358085 |
|---|
| Protein GI | 217973334 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000264875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000300576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACAC GTTCACTGCT CAGCATAGCG ATAGCTTCAT CAATATCTTT GATGTGCCAA
AACGCTTATG CAGAAGAAGA AAAAAAAGTT GATGAGATAG AAGTGATTCA GGTTACTGGC
ATTCGTGATT CGTTAACGAA GGCTATCGAG CTGAAGCGGC AGAACGTTCA AATTGTTGAT
TCCATCATTG CGGAAGATAT TGGTAAGTTT CCCGATAATA ACGTGGTTGA GGCTCTGCAA
AGGGTCACAG GCGTGCAAGT GACTGGTCGA GGCGGCGGAG AAGTGAGTGG CGTTACTATC
CGTGGATTAG GCGATGTTTC AACCACGATT AACGGTCGTC AAATTTTTAC TTCTACAGGG
CGTTCTGTGG CATTAGCGGA TATTCCAGCC TCGCTACTGA ACAGTGTTGA CGTGTATAAA
ACGCGTTCAG CCAACCTGAT TGAAGGCGGC ATCGCGGGCC AAATTGACAT TAAAACCCAG
CGGCCCTTCA ACTTCTCTGG GGAGAAGATT GTCGTTGCCG CCCGTGGTAT CTACAGTGAT
GCAACTGAAA AAGTTGACCC TAATTTCAGT ATTCTTGCCA GTGACCGTTG GGATACAGGC
GCAGGTGAAT TTGGCGCCTT AATCAACGCT TCTTATGCTG AGAGTAATTA TCGCGATCAA
AACATTTGGG TCGGCTCTTC TGATCCCTAC CGTGCCGATA ATTTTGAGCG GATTAACGCT
GCATTTGTGA CGCGTGGTGA AGAATTATCC ACAACGCCAG GTTCAACGCT CAATGTTAAT
GGGGTTGATA CAGAGTATGT GTTGCTGCGC GATGCGATGG GCTTGACCGA TTATACTGGT
ACCCGCAAGC GCCCTGCCGT TAACTTATCA CTGCAATGGC AGCCTAATGC CACGTCAGAG
TATCTCTTCG AAGCTTTCTA TAACGGTTAT CGCAATGAAG ATTTTAACTC GCTGCTGTTT
TCATTTGTTA ATGGTAACAG TCATTTCAGA AACCCAGAGT TCTACGATAA TACTAATGTG
GTGAAGAAGA ACTACATCAA TAACGCTGCC TTGTTTACCA GCGGTGATGG TTCTACGGGC
GAGACTGATA GCTATGTTTA TGCATTAGGT GGTAAATGGG ATATTGGTGA CGACTTAAGA
TTACGATCCG AAATCAATTA TCAAACCAGT AAATTCACTC GCTCTTTTGT TGCCATGCAA
ACCAACGCAG TACGCGATCA GTTAGCCGTA GATTTTAATT ACAATGGCAC AGGTAACCCT
GCTTTTGCAT ATCTAGATGA CCCAAGCACG ACTGATATTG ATGAAGGCAG TTTGACCAAC
GCCGCCGACT TCAATATGGG CAGCTTGTTC GACACTAGCG GTAAAGATGA AGGTGATGCG
ATTTCGTGGA ACTTAGATGG TGACTATGCC ATTGAAGCGG GTCTATTTGA CACGATCGAT
TTTGGTGTGC GTTATGATAA ACGTACCGCC AAATCTAAAT CGAAAGATCA AAGCAGTGGT
AGTTGCTCCA TCAATGGCAC AACTTGTCGT TTAACAGATA TTGCAGGCTT ATCAACGACG
TCGGAATCCG GCTTCTATGA TGGTCAAGCC TATGTGCCAA GCAACTGGTT GTCTGCTGAC
GGCGGCTATC TGTTGGATAA TGTAGGACAA ATGCGTGAAT ACTATGACTT GGCAGTCAAC
GGCGGTGGTT ATTTAGATTC GCGCTCTTTT GACATTGAAG AACAAACCAT GGCGGCCTAT
CTGCAAACGA ACTACAGCAC CGAACTCTTT GGTTTACCTT TAGATGGTCA GATAGGCGTG
CGTGTGGTGA ACAGCAGTAC TGATCTGGCC TTTAATGAAT CAGCGGCGAG TAAAGTAACG
CAATCAACCG ATGCAACCGA TGTGCTGCCA AGCTTTATGG CGCGCTACTA CCTAACCGAT
GATCTGTTAT TGCGCTTATC CTACGGTAAA ACAATAAGTC GTCCTGCTTT TGGTGACTTA
AACCCTACCA TGACACTGAC ACCTCCTAAT GCCGGTACTG AGGCTGAATT TGGTTATGCA
TCGAGCGGTA ATCCAGATTT AAAACCGGTT GAATCGCAGA ACTACGATCT ATCATTAGAA
TATTATTTTG CACCAAGTAG TAGCTTATAT GGCGTGCTGT TTAAGCGTGA AGTCGATGGT
TTTGTCTACA CCACGAGTCG CAACATCGAA GTGACTGACA ATCCAAATCC AGATTACAAC
GCAAAATATG TACTCACACA ACCATCCAAC GCAGGTAAAG GTAGCTTAGA TGGTTTAGAA
CTGGGATTTA CCTACTTCCC AGATGAACTG CCTAATTGGT TGCAAGGTAT TGGTATACAA
ACTAGTTACA CCTACATAGA TGGTAAAACC AAAGATCCTA TCTTTGCCGC TGATACTGAT
GGCGGTGCGG GCGAGCTTAT TGGTTATGAA ACTAAGCCGT TAGTCGGTGT CTCTAAAAAC
TCATACAGCG TGGTATTAGC CTATGAGAAA GCAGGTTACT CTGCACGCTT GTCCTATGTA
TATCGTGATA AGTTCCTAAC GGGTTATAAC TTCTGCTGTT CAATGCCAAC GGGGATTTAC
AGCGACTCAG AAGCGAACAT GGACTTTCAA TTTAGCTGGG ATGTTACCCC TGATTGGGTA
CTGACCTTCG ATGCCACTAA CTTAACCGGT GAAGAGTTCC ACTCTGCTTA TACTGACTTT
AACTTGTATA ATAGTGGTTC ATCTTTGTAT AGCCGCACCT TTGCGATTGG TACGCGTTAC
TCTTTCTAA
|
|---|
| Protein sequence | MFTRSLLSIA IASSISLMCQ NAYAEEEKKV DEIEVIQVTG IRDSLTKAIE LKRQNVQIVD
SIIAEDIGKF PDNNVVEALQ RVTGVQVTGR GGGEVSGVTI RGLGDVSTTI NGRQIFTSTG
RSVALADIPA SLLNSVDVYK TRSANLIEGG IAGQIDIKTQ RPFNFSGEKI VVAARGIYSD
ATEKVDPNFS ILASDRWDTG AGEFGALINA SYAESNYRDQ NIWVGSSDPY RADNFERINA
AFVTRGEELS TTPGSTLNVN GVDTEYVLLR DAMGLTDYTG TRKRPAVNLS LQWQPNATSE
YLFEAFYNGY RNEDFNSLLF SFVNGNSHFR NPEFYDNTNV VKKNYINNAA LFTSGDGSTG
ETDSYVYALG GKWDIGDDLR LRSEINYQTS KFTRSFVAMQ TNAVRDQLAV DFNYNGTGNP
AFAYLDDPST TDIDEGSLTN AADFNMGSLF DTSGKDEGDA ISWNLDGDYA IEAGLFDTID
FGVRYDKRTA KSKSKDQSSG SCSINGTTCR LTDIAGLSTT SESGFYDGQA YVPSNWLSAD
GGYLLDNVGQ MREYYDLAVN GGGYLDSRSF DIEEQTMAAY LQTNYSTELF GLPLDGQIGV
RVVNSSTDLA FNESAASKVT QSTDATDVLP SFMARYYLTD DLLLRLSYGK TISRPAFGDL
NPTMTLTPPN AGTEAEFGYA SSGNPDLKPV ESQNYDLSLE YYFAPSSSLY GVLFKREVDG
FVYTTSRNIE VTDNPNPDYN AKYVLTQPSN AGKGSLDGLE LGFTYFPDEL PNWLQGIGIQ
TSYTYIDGKT KDPIFAADTD GGAGELIGYE TKPLVGVSKN SYSVVLAYEK AGYSARLSYV
YRDKFLTGYN FCCSMPTGIY SDSEANMDFQ FSWDVTPDWV LTFDATNLTG EEFHSAYTDF
NLYNSGSSLY SRTFAIGTRY SF
|
|---|
| |