| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0168 |
|---|
| Symbol | |
|---|
| ID | 7086770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 189393 |
|---|
| End bp | 191987 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643459090 |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_002356130 |
|---|
| Protein GI | 217971379 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACT CAATATTATT AAAGTATAAA TCATTTGGTG TGTTCCTTAT TGCTCTCGTA
ACAATAGTAA CGCCACTCGT AGTTGCAGAT GAGTTGTCAG AGGGTAATGA TGAGTCCCAA
GAGTTTATAT TTGATGATAG CCTTTTGTTC GGTGGTGGGT ATGGTGAGAA TTACCTTGCA
CGTTTTAACA CAGTGGAAAA AATCCTCCCA GGTAGATATC AAATTGATAT CTATCTCAAT
AATGAACGGC TAAATAGACA AATTATCAAA TTTGTTGCTG AAGACTCTAA GAGGGTATTC
CCTTGCTTAG ATGTCAGCTT TTGGCGTGAA ACGAATATTA TTTCAACCTT TATTGATGAG
ACATTAATTG AAAATGGTCA GTGTGTATTA CCCGAGAGCG TTGTGAGAGG GGTATCGACA
AAATTTGATT CTGAACAGTT AAGATTAGAT ATAGCTATTC CGCAGGCGTA TTTGCAGCAG
ACGCCGCGCG GATTTGTTGA CCCAAACTCA TGGGATGCAG GAGATACAGC TGGATTTATT
AGTTATAACA GTAATTTTTA TCAGACCACA AGTCGTGGTA ATGGTAGTGA TATGCGCACT
TTTTACACTG GGCTAAATAC AGGTGTTAAT TGGGGTTTAT GGCGACTAAA AAATCAATCG
AGTTATCACT ATAATGAGGT TAATCAAGAC TCTCAAGACA GTTTTAATTC CATTCGGACA
TACGCCATAC GTGCATTACC AGACACCCAA AGTGAATTAT TGCTGGGTGA AGGTTACACA
CGAGGTAATG TCTTTGGAAG TTTAAGTTTT ACAGGCATTC AGCTTCAGAC TGATAATCGT
ATGTTGCCAG ATTCACTACG AGGTTATGCT CCAGTAGTTA GAGGATTAGC GAATACTACA
GCTAAGGTTG TAATTAAGCA GAATGGGGTG AGCATATATC AAACTACGGT GGCAGCTGGT
CCTTTTGCTA TAAGTGATTT ATATCCTACA AGTTATGAGG GAGATCTCCT TGTTGAAATA
ACAGAAGCTG ATGGCAGTAT ATCGAGTTTT AATGTGCCAT TTAGTGCTGT CCCTGGTTCC
TTACGTGAGG GGCAGTCCCA GTACGCATAT TCGCTCGGTG AAGTATCCCA CTATGGTTCT
GGAGGTTATT TAGCTGATTT AACCTATGAG CATGGCTTGA GTAATGCATT AACGCTTAAT
ACCAGTGGTC GGATTGGCAA GGATTATTTT GCCCTAAGTA TAGGGACAGT TTTGGGAACT
GAGTGGGGAG CATTTGGCTT TACTACAGTT CATTCAAGTT CGCGAATTGC AAAATACACA
GAATATGATG AATGGAAGAA TGGCTGGCGT GTTGGTGTTA ATTATAGTCA ATCATTCGAT
AGTGGAACTG CGGTTACTTT GGCCGGTTAT CATTATTCAA CAGAGTCTTA TCTAGAGTTA
AGCGATGTTC TAGGTTTAAG GGCTATGCTT TCAAACCAAG ATAAATTTGT GTCAGCCACT
TATCTGCAGC AGGCAGAGAT GAGTATAAGC CTAAATCAGA GCTTAGATGA TTTAGGTTAC
ATTTATATCA GTGGGTCAAA GCGTCAATAT CGAGATGGTC GTGCTGACGA TGACCAAATT
CAACTAGGAT ATTCAGTAAG TTTTGGCAGC ATTAACTTAG GACTCAATTT TTCGCGCCAA
TATACCAGTG AGTTTGCAAC ACAAAATAGT TTTGCTGACT TACAAATAGA TAAAGTTGAT
ACTTATGATT CAAATAGGCA GAAAGAGGAT TTATGGAGCC TTACATTTTC AATGCCTTTT
GGTAGCACTC AATCTAACAC GCTAAATACT GGTATTAGTC GTTCTTCTAG AGAAATGAAC
AATTATAATC TAGGCCTATC TGGTGCAGTT ACAGATGATA AAACATGGGT TTATGGTTTA
AGTGCTGCAA AGAGTAGTGC CAATAATAGT TTGAGTATCA ATACGCAGAA ACGATTTAAT
CAAGCAGCAT TGACTGGGAG TCTCTCTATT GCAGATGAGT ATCAACAGGT TAGTACAGGT
ATTAGTGGCG CAGTAGTGGC TCATTCTGGC GGCATTACAT TAAGTCAAAA CTTAAGTGAA
ACATTTGCGA TTATTGAGGC TGAAGGAGCA AAAGGAGCCA AAGTGACTAA TAGCTGGGGG
ACGGAGATAG ATAGTGCAGG TTATGCAATT GTCCCCTCAT TGACACCTTA CCGTATCAAT
AAAGTTACGC TCGACACAGG TGATATGTTA AGTAGTACAG AGCTTTTAAA TACACAACAA
CAAGTTGCGC CCTATGCAGG GGCCATTGTA AAGATGAAGT TCGATACACG GTATGGTATT
GCCGTTTTAT TTATGACGAG CTTAACTGAT GCAAGCGTTA TTCCAATCGG TGCCGAAGTG
AAAGATCTCG ATGGTCACAT TATAGGTTTA GTCGGACAAG CGGGAATGGC TTATGTGCGG
GCCCCTCAAG CGAACGGGCA ACTTACTATA AATTGGGGAA ATAAGGTTGG GCAACAGTGT
CGTTTTGACT ATGATTTGAG CATCAATGAC AAGTCCCTGC AAAGATTTCC TGTTAAATGT
ATTCTGATAA ATTAA
|
|---|
| Protein sequence | MKDSILLKYK SFGVFLIALV TIVTPLVVAD ELSEGNDESQ EFIFDDSLLF GGGYGENYLA
RFNTVEKILP GRYQIDIYLN NERLNRQIIK FVAEDSKRVF PCLDVSFWRE TNIISTFIDE
TLIENGQCVL PESVVRGVST KFDSEQLRLD IAIPQAYLQQ TPRGFVDPNS WDAGDTAGFI
SYNSNFYQTT SRGNGSDMRT FYTGLNTGVN WGLWRLKNQS SYHYNEVNQD SQDSFNSIRT
YAIRALPDTQ SELLLGEGYT RGNVFGSLSF TGIQLQTDNR MLPDSLRGYA PVVRGLANTT
AKVVIKQNGV SIYQTTVAAG PFAISDLYPT SYEGDLLVEI TEADGSISSF NVPFSAVPGS
LREGQSQYAY SLGEVSHYGS GGYLADLTYE HGLSNALTLN TSGRIGKDYF ALSIGTVLGT
EWGAFGFTTV HSSSRIAKYT EYDEWKNGWR VGVNYSQSFD SGTAVTLAGY HYSTESYLEL
SDVLGLRAML SNQDKFVSAT YLQQAEMSIS LNQSLDDLGY IYISGSKRQY RDGRADDDQI
QLGYSVSFGS INLGLNFSRQ YTSEFATQNS FADLQIDKVD TYDSNRQKED LWSLTFSMPF
GSTQSNTLNT GISRSSREMN NYNLGLSGAV TDDKTWVYGL SAAKSSANNS LSINTQKRFN
QAALTGSLSI ADEYQQVSTG ISGAVVAHSG GITLSQNLSE TFAIIEAEGA KGAKVTNSWG
TEIDSAGYAI VPSLTPYRIN KVTLDTGDML SSTELLNTQQ QVAPYAGAIV KMKFDTRYGI
AVLFMTSLTD ASVIPIGAEV KDLDGHIIGL VGQAGMAYVR APQANGQLTI NWGNKVGQQC
RFDYDLSIND KSLQRFPVKC ILIN
|
|---|
| |