| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_0901 |
|---|
| Symbol | |
|---|
| ID | 7084759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 993208 |
|---|
| End bp | 994296 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643697924 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002354564 |
|---|
| Protein GI | 217969330 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.457949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTGA AGTTCGGCTG GATGGCGGTG CTGGCCCTGG CCGCCGGGGC GGCGGTGGCG
GCCGAGGAGC CCATCCTCAA CGTCTACAAC TGGAACGACT ACATCGCCGC CGACACCATC
CCCGCCTTCG AGAAGGCGAG CGGGATCGAG GTGCGCTACG ACCTCTACGA CAGCAACGCC
ACGCTGCAGG GCAAGCTGCT GACCGGCGGC AGCGGCTACG ACGTTGTGTA CCCGAGCGTG
GAGTACGCCG GCAAGCAGAT CCAGGCCGGC ATCTTCCAGC CACTCGACAA GTCGCGCCTG
CCCAATCTCG TCCATATCGA CCCGCTGATC CTCGAGGCGG TGGCGGTCGC CGACCCCGGC
AACCGCTACC TCGTACCCTA CATGTGGTTC ACCATCGGGG TGGCGATCAA CGTCGACAAG
GTCATGAAGG CGCTCGACGG CAAGCTGCCC GACAACGCCT GGGACCTGCT CTTCGACCCT
GCGCTGACCG CGCGCCTGAA GGGCTGCGGC ATCGCGCTGA TGGACGAGGC CAGCGACGTG
ATCCCCGCGG CCATGCTCGA CGCCGGCCTC GACCCGGTGA AGATGGACCC GGCCGACATC
CGCGCCGCGG TCGAGCACAT CCGCCCGGTG CGCAAGGACA TCCGCAGCTT CAACACCGCG
CCCATCGAGC AGATGGCCAA GGGCAGCCTG TGCGTGGCGA TGATGTTCTC GGGCGACGCC
CGCATCGCCG CGCGGCGCGC GCAGATCGGC GGCTCCGAGG TCAGGCTGCA GTACCTGATC
CCGGCCGTGG GCGCGATGAT GTCGGTGGAC GTGATGGCGA TCCCGCGCGA CGCGCCGCAC
CCGCATAACG CCCACCGCTG GATCGACGCG ATGATGGACC CGGCCACGGT GGCGCGCATC
TCCAACGAGA CCTTCTACAT CAGCGCCAAC ACCGCGGCGC TCGCGCTCAC CGACGCCACG
CTGCGCGACG ACCCGGCGAT CAACGTGCCG GAGGCGGTCA AGCGTACGCT GCGCGCCAAG
CCGGTGCTCG GCAAGGACGT GCAGCGCGAG CTGACCCAGG CGCTGAATCG CTTCAAGGCG
GCGCGCTGA
|
|---|
| Protein sequence | MTLKFGWMAV LALAAGAAVA AEEPILNVYN WNDYIAADTI PAFEKASGIE VRYDLYDSNA
TLQGKLLTGG SGYDVVYPSV EYAGKQIQAG IFQPLDKSRL PNLVHIDPLI LEAVAVADPG
NRYLVPYMWF TIGVAINVDK VMKALDGKLP DNAWDLLFDP ALTARLKGCG IALMDEASDV
IPAAMLDAGL DPVKMDPADI RAAVEHIRPV RKDIRSFNTA PIEQMAKGSL CVAMMFSGDA
RIAARRAQIG GSEVRLQYLI PAVGAMMSVD VMAIPRDAPH PHNAHRWIDA MMDPATVARI
SNETFYISAN TAALALTDAT LRDDPAINVP EAVKRTLRAK PVLGKDVQRE LTQALNRFKA
AR
|
|---|
| |