| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_5459 |
|---|
| Symbol | |
|---|
| ID | 6978553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011368 |
|---|
| Strand | - |
|---|
| Start bp | 1102279 |
|---|
| End bp | 1105914 |
|---|
| Gene Length | 3636 bp |
|---|
| Protein Length | 1211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643394559 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002279377 |
|---|
| Protein GI | 209547459 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3447] Predicted integral membrane sensor domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.125854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0422439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA TCTGGTCGCA CCGCCCCCGC GCCCTGTATC TGGGGCTCTT CATCGCCGCC
TATGTGCTCG GCTGTGGCTT TGCCCAATCA CTCGCGATCG TGCCGGGAAC GGGCATTTCC
ATCTGGCCTC CGGCCGGGCT TTTCATCGCA ACGCTCATCC TCGCCCCCAG GCGCAGCTGG
CCGTGGTGGA TATTGGGGGG CTGCTTGGCT GAGCTGTTCA GCAATGCCCT CTGGTTCTAC
AGTCCGCTGC CGGCCGCCTT TCTGATATAC GTCGGCAACG CTCTTGAAGC CGTGGTCGCG
GCATGGCTGG TCAATAGAGC CTTGAAGCGG CCGGCTCAGC TGGAAACCTT GCAGGAGGTT
CTCGCATTCG TCGTCCTGGG CGCCGGAATT GCGCCGATCG TCAGCGCGAC GGTGGGAAGC
GCGACGCTTG CATGGTTCGG CATCCAATCG CAATCCTTCC TAACCGCCTG GCCTCTCTGG
TGGATCGGTG ATGCAACCGG TGTCCTGATC GTCGCGCCGC TGGCGCTCTC CGTCTTCCAT
AACTGGCGCG GCAAGACTCG CCTCTCCGCG GCGCAATGGG TGGAAGCTGG CGTCCTTGGG
CTGATTTTTC TCGGTGTCGC CGCTCTTTCG CTCAGCGGCT ACCTTCCCTT CGCCTACATC
ATCATGCCGC CCCTTCTTTG GGCCGCGGTC CGCTTCGAAT TCAAGGGCGC CGCCATATCG
CTCGTGCTAC TCGCCCTGAT CACGGCCGTC TTCACGATCA CAGGCGCCGG CCAATCTGTC
GGCGATGCCG AGTCCCAGAA ACACAAGCAG ATCATGCTGC AGCTTTTCCT GGCGATCTCG
GCATTTTCGG CGCTGATCGT CGCCGCCATA TCCAGGCAGC ATCAGCTGGC CGTGCTCACA
TTGCGGCAAA GCGTGGAGAC GTTGCGCGAG CGGGAGCAAG AGCTTTCGCA GCTCGTCGAC
ATGGTTCCGA GCCACGTCTG GCGCCTGACG CCCGAGGGCG AACCAACCTT TTTCAACAGA
AGGATGGTCG ACTTCCTCGG CTTCGATGTC GCGGATACGG ACAGGCCCGG CATGAGCCGG
CTGGAAGCGG TCATCGAGGC CATCATTCAC CCTGATGATG CAGCCGGCTT CCGGGATGCC
CTCAATCATT GCCTCGTCAC CGGCGAAAAC TTCGCCATGC GGTATCGGCT GCGCCGCGCC
GACGGCATCT ATCATTGGAT GTCGAGCCGC GCCGAACCGA TGCGGGATCA GAGCGGCAGC
ATCGTCCAAT GGTACGGCCT TTGCCACGAC ATCGACGATC AGGTCCGTGC CGAAGAGGCG
GTGCGCGAGA GCGAGCGAGC GCTTCAGCAG ATGATCGACG CGGTGCCGGT TCGGGTCTGG
AGCTTGGAGC CGACGAGCGG GTCGGTCTAT TTCAATAAAC GCTATCAGGA TCATTTCCGC
GCCGTCATCG CCGATTTCGA CGCTCTCGGC GAGCCGCGCA TCGAAGACCT GCTGCGACAG
CTGATTCATC CCGAAGACGC GCCCGACGTC CAGCGCACGC TGCGGAATTG TTTCGAAAGC
GGCGGCGGCA CCGCCATGCG GTTTCGCTGG CGCGAAAAAG ACGACGTCTA CCGCTGGGCG
GAGTGCCGGG TCGAACCCCG GCACGACGAC GATGGAAGGG TCGTGCAATG GTACGGCGTG
TCTCTCGATA TCGACGAGGA GGTGCGTGCC CTCGAGGCAT TGCGTGATCG CGAACGCGAA
CTCTCGCAGC TCGTCGACAT GGTCCCGGCC CAGATCCGGC GACTGACACC GACAGGCGAG
CCTGTCTTCT TCAACAAACG CCTGATCGAT TTCTTTGGTC TCGACGTCGG CGACATGGAC
AAGCCGGGCG TGAGCCGCCT GTCGGCTGTC ATCAATACTC TCGTTCATCC CGATGACGCA
CCGAGGTTGC TTCAGACGGT TCACCGTTCC CTGGCCAGCG GTGATCCCTT CTCGATCAAA
TACCGCATGC GCCGTTTCGA CGGAGCCTAT CGCTGGGTCG ACGGCCGCGC CGAGCCGCTG
CGGGATCAGA ACGGCACGAT CACGCAATGG TACGTCATCT CGGTCGATAT CGATGACGAG
ATGCGCGCGC AGGAAGCCTT GCGCGACCGG GAACGCGAGC TCTCGCAACT GGTGGACATG
GTTCCGAGCC TGCTCTGGCG GCTTGATCCG GAAGGGACGC CGACCTTCTT CAACCAGCGC
CTGAAAGATT TTCTTGGTCT CGACATCATT GGTAGGGAAG CCCCGGGCGT GAGTCGGCTT
ACGGACCTCA TCGAGGCCGC CGTCCATCCC GACGATGCCA CCAGTCTCGC CAAAGCACTC
AACCAATCCC TCGCCACGGG CGAGCGCTTC TCCAAGCAGT ATCGGCTGCG GCGCGCCGAC
GGCATCTATC GCTGGGTCAG AGGCAGCGCA GAGCCGCTAC GCGACGAGAG TGGCCGGATT
GTCCAATGGT ACGGTCTCTC GCACGACATC GACGATCAGC TGCGTGTCGA GGAGGCGCTG
CGAGAAAGAG AGCGCTCGCT CTGGAAGATC GTCGAAACCC TGCCGGCCAT GATCGATTGC
GCGGCTCCCG ACGGAGAGCC GGTCTATCGC AATCCCCAGC TTCGCGACTT CCTCGGATAT
AAGCTCGAAG AGCTTGATGG AACGGGGAAA ACCCGACTGG ACGGCACGCT CGACGCCGGC
GTTCATCCCG ACGACGTGGC GGGTGTCAAA GAGAATTATG CCCATTCATT GTCCACCGGC
GAGCCCTATG CGCGCCGGCA TCGTCTGCGG CGCTACGATG GGGAATATCG CTGGGTCGAG
ACGCGCGCTG CGCCGATGCG CAATGCCGAG GGCGTCATTG TCCAGTGGAA CGTCATCTGC
CTCGATGTCG ACGCTGAAGT TCGGGCGGAG GAAGATCTGC GCCAGGCGCG CGAAGGCCTT
GCACGGGCTA GCCAGGTGGC GAGCCTTGCC GAGCTTTCGG CCTCCATCGC CCACGAGGTG
AACCAGCCGC TCGCGGCCGT CGTCGCAAAC TCGCATGCCT GTCAGCGCTG GCTGATGGCC
GAACCGCCGA ATATGGAGCG GGCGCAGAGG ACGGTCGAGC GCATCATCCG CGACGCCAAC
TCGGCCGCCG ATGTCGTCAG CCGCATCCGC GCCCTGTTCA AACAATCCGC AGACCGGAGG
GTCCACACGA CGCTGTTCGG CGTTGTCGAC GAAGCCCGCA ATCTGATGGC CGCCGAAGCG
GCGCGGCGGC GCGCCAGGAT AGACGTCGAG GTTGACGGCA ATCTTCCACT CATCGCCATC
GATCGCGTCC AGATCCAGCA GGTATTGATC AATCTCATCC GCAACGGCAT CGAGGCGATG
GACACGGTCG ACGGCGACAG GGTGATCGGG ATGCGCGTGC GCCATATGGG GAATGCCATT
CAGACCGAAA TCAGCGATCG CGGTCAGGGT ATCGAGTTCC CCGAGAAGAT GTTCGAACCT
TTCTTCACGA CCAAGGAAAA CGGCATGGGC ATGGGTCTGG CGATTTGCCG CTCGATCGTC
GAGCTGCACG GCGGACGATT GTGGGCAGAG AAGAACGATC CGCACGGAGC GACGTTGATC
TTCACCTTGC CGATAGAAAC GAAGGCGGCG TCATGA
|
|---|
| Protein sequence | MTSIWSHRPR ALYLGLFIAA YVLGCGFAQS LAIVPGTGIS IWPPAGLFIA TLILAPRRSW
PWWILGGCLA ELFSNALWFY SPLPAAFLIY VGNALEAVVA AWLVNRALKR PAQLETLQEV
LAFVVLGAGI APIVSATVGS ATLAWFGIQS QSFLTAWPLW WIGDATGVLI VAPLALSVFH
NWRGKTRLSA AQWVEAGVLG LIFLGVAALS LSGYLPFAYI IMPPLLWAAV RFEFKGAAIS
LVLLALITAV FTITGAGQSV GDAESQKHKQ IMLQLFLAIS AFSALIVAAI SRQHQLAVLT
LRQSVETLRE REQELSQLVD MVPSHVWRLT PEGEPTFFNR RMVDFLGFDV ADTDRPGMSR
LEAVIEAIIH PDDAAGFRDA LNHCLVTGEN FAMRYRLRRA DGIYHWMSSR AEPMRDQSGS
IVQWYGLCHD IDDQVRAEEA VRESERALQQ MIDAVPVRVW SLEPTSGSVY FNKRYQDHFR
AVIADFDALG EPRIEDLLRQ LIHPEDAPDV QRTLRNCFES GGGTAMRFRW REKDDVYRWA
ECRVEPRHDD DGRVVQWYGV SLDIDEEVRA LEALRDRERE LSQLVDMVPA QIRRLTPTGE
PVFFNKRLID FFGLDVGDMD KPGVSRLSAV INTLVHPDDA PRLLQTVHRS LASGDPFSIK
YRMRRFDGAY RWVDGRAEPL RDQNGTITQW YVISVDIDDE MRAQEALRDR ERELSQLVDM
VPSLLWRLDP EGTPTFFNQR LKDFLGLDII GREAPGVSRL TDLIEAAVHP DDATSLAKAL
NQSLATGERF SKQYRLRRAD GIYRWVRGSA EPLRDESGRI VQWYGLSHDI DDQLRVEEAL
RERERSLWKI VETLPAMIDC AAPDGEPVYR NPQLRDFLGY KLEELDGTGK TRLDGTLDAG
VHPDDVAGVK ENYAHSLSTG EPYARRHRLR RYDGEYRWVE TRAAPMRNAE GVIVQWNVIC
LDVDAEVRAE EDLRQAREGL ARASQVASLA ELSASIAHEV NQPLAAVVAN SHACQRWLMA
EPPNMERAQR TVERIIRDAN SAADVVSRIR ALFKQSADRR VHTTLFGVVD EARNLMAAEA
ARRRARIDVE VDGNLPLIAI DRVQIQQVLI NLIRNGIEAM DTVDGDRVIG MRVRHMGNAI
QTEISDRGQG IEFPEKMFEP FFTTKENGMG MGLAICRSIV ELHGGRLWAE KNDPHGATLI
FTLPIETKAA S
|
|---|
| |