| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_5945 |
|---|
| Symbol | |
|---|
| ID | 6977460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011366 |
|---|
| Strand | - |
|---|
| Start bp | 359821 |
|---|
| End bp | 360651 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643393397 |
|---|
| Product | Shikimate dehydrogenase substrate binding domain protein |
|---|
| Protein accession | YP_002278215 |
|---|
| Protein GI | 209546325 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.039138 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACCG GCACGACCAA ACTCATCGCC CACCTCGGCT ACCCCACCGA GTCCTTCAAG
GCGCCTCTGA TCTACAATCC CTATTTCGAG AAGAACGGCA TCGATGCGGT CGTCGTGCCG
ATGGGCTGCC GGCGGGAAGA CTATCCGGCG TTCTTGAAGC TTGTCTTCCG GCTCTCCAAC
ATTCACGGCG CGCTCATCAC CATGCCGCAC AAGATTGCGA CGATGGCGCT GCTCGACGAA
GCTTCGACCA ATGCCAAGGT CGCAGGCTCG TGCAATGCGG TGCGTCTCGA TCCGAACGGC
AGGCTGATCG GCGACATGTT CGATGGCGAA GGCTTTGTCC GGGGCGTTCT GCGCAAGGGC
AAAAAGGTCG AGGGCGCAAA TGCGCTGGTC GTCGGCGCCG GCGGCGTCGG CTCGGCGATC
GCCGCATCCC TCGCGAAGGC GGGCGTCGCC CAGCTGGCGA TCGTCGACGC CAACAAGACG
ACCTCGGCGG CGCTGCTCGA CCGGCTGAAG ACATATTATC CCCACCTTCA CGTCACGATC
GGCTCTCTCG ACCCGACGGG CTTCGACATC GTCGTCAACG CAACGCCGCT TGGAATGCGG
CGGGGTGACC CGCTGCCGAT TGATGTCGAC CGCATCTCCC CATCGACCTT CGTCGGCGAG
GTGGTGTTGA GCAAGGAAAT CACCCCTTTC CTCGAGGCGG CCCGGGCGCG CGGCTGCACC
TTTCAGGTCG GCACGGATAT GCTGTTCGAA CAAATCCCCG CCTATCTCGA ATTCTTCGAA
TTCCCGACAA CGACGGCCGA CAATCTGCGG GCAATCGCCA AGCTCGGTTG A
|
|---|
| Protein sequence | MITGTTKLIA HLGYPTESFK APLIYNPYFE KNGIDAVVVP MGCRREDYPA FLKLVFRLSN
IHGALITMPH KIATMALLDE ASTNAKVAGS CNAVRLDPNG RLIGDMFDGE GFVRGVLRKG
KKVEGANALV VGAGGVGSAI AASLAKAGVA QLAIVDANKT TSAALLDRLK TYYPHLHVTI
GSLDPTGFDI VVNATPLGMR RGDPLPIDVD RISPSTFVGE VVLSKEITPF LEAARARGCT
FQVGTDMLFE QIPAYLEFFE FPTTTADNLR AIAKLG
|
|---|
| |