| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4921 |
|---|
| Symbol | |
|---|
| ID | 6967233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 4559865 |
|---|
| End bp | 4560554 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643388604 |
|---|
| Product | chaperone protein FimC |
|---|
| Protein accession | YP_002273031 |
|---|
| Protein GI | 209398252 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA GTAAATTTGT TGCGTTGGCT CTCTCTCTGT TCCTTTCACA GTCAGTTCTG
GCGGGTGGCG TCGGACTTAG CTCTACTCGC GTAATTTATG ATGGCAGTAA GAAAGAAGCC
TCGCTGACCG TACAGAATAA AAGTAAGACG GAAGAGTTTC TTATCCAATC CTGGGTGGAT
GATGCCGCGG GCAGCAAAAA AACACCGTTT ATTATTACGC CCCCACTATT CAAGCTTGAT
CCAGAAAAGA ACAATATTTT GCGTATTGTG AATATTACGC CCGGCCTGCC TCAGGATCGC
GAATCGGTCT ACTGGGTTAA TGTGAAAGCC ATTCCATCTA AAAGTGACGA CAGCGAAAAC
AAAAATGTTT TGCAGATTGC CGTTCGCACC CGAATCAAAC TTTTTTATCG CCCGGCAGGT
TTAAAGGGTG ATGTAAAAAC CGCGCCAAAT GAACTGCGAT TTACGCGTAA CGGTAATCAG
CTCCGCGTTG ATAATCCGAC AGTTTTTAAT ATTACCTTTA ATCAATTTTT TGCGAATGAC
AAAGAAATTG AAAAAGCAGG CATGGTACCC GCTAAAGGGG CATTAAATAT CACATTACCC
GCCGGGGTAG GTAGCGTTTC TAAAATTAAA TATAACACCA TCAATGACTT TGGATCGTCA
GCGGAAATGA TCACTAAAAA TGTTGATTGA
|
|---|
| Protein sequence | MMKSKFVALA LSLFLSQSVL AGGVGLSSTR VIYDGSKKEA SLTVQNKSKT EEFLIQSWVD
DAAGSKKTPF IITPPLFKLD PEKNNILRIV NITPGLPQDR ESVYWVNVKA IPSKSDDSEN
KNVLQIAVRT RIKLFYRPAG LKGDVKTAPN ELRFTRNGNQ LRVDNPTVFN ITFNQFFAND
KEIEKAGMVP AKGALNITLP AGVGSVSKIK YNTINDFGSS AEMITKNVD
|
|---|
| |