Gene ECH74115_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_1100 
Symbol 
ID6970853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp1130696 
End bp1131235 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content42% 
IMG OID643385111 
Productfimbrial protein 
Protein accessionYP_002269610 
Protein GI209396269 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.159551 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.51089 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAA GTGTATTGAC GGCGTTTATA ACTGTGGTAT GTGCAACGTC CAGCGTTATG 
GCTGCTGATG ATAATGCTAT CACGGATGGC TCAGTAACAT TTAATGGTAA AGTTATTGCT
CCAGCTTGTA CCCTGGTAGC TGCGACGAAA GATTCCGTGG TGACTTTGCC AGATGTTAGT
GCCACGAAGT TGCAAACCAA TGGTCAGGTT TCTGGCGTGC AAACTGATGT GCCAATTGAA
TTAAAAGATT GTGATACTAC CGTAACAAAA AATGCAACGT TCACCTTTAA TGGCACTGCG
GATACTACTC AGATTACAGC GTTTGCTAAC CAGGCCTCAT CTGATGCTGC TACAAACGTG
GCCCTGCAAA TGTATATGAA TGATGGTACA ACGGCCATCA AGCCAGACAC AGAAACCGGG
AACATTTTGT TGCAAGATGG AGATCAGACG TTGACTTTTA AAGTTGATTA TATCGCTACG
GGGAAAGCGA CTTCTGGTAA TGTGAATGCG GTAACAAATT TCCATATTAA CTATTATTAA
 
Protein sequence
MKKSVLTAFI TVVCATSSVM AADDNAITDG SVTFNGKVIA PACTLVAATK DSVVTLPDVS 
ATKLQTNGQV SGVQTDVPIE LKDCDTTVTK NATFTFNGTA DTTQITAFAN QASSDAATNV
ALQMYMNDGT TAIKPDTETG NILLQDGDQT LTFKVDYIAT GKATSGNVNA VTNFHINYY