Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II1099 |
Symbol | |
ID | 6962406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | - |
Start bp | 1197099 |
End bp | 1199024 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643382336 |
Product | membrane signal transduction protein |
Protein accession | YP_002265365 |
Protein GI | 209809826 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTAT ATAAACAGCT CGTATCATGG ATGACAGCCG TCTTTTTATT GTTACTGATA TCTGTCTTTG CGATTGAATT TCGCACCACT CAAACCTTCT TAGAGAACCA ACAGCGCTCA GAAGTAAATA ACACGATCAA TTCGATGGGC CTCGCTCTTG CTCCTTATTT AGAAAATGAG GATAAAGTTG CAGCAGAATC TGTGATTAAT GCTTTATTTG ATGGCAGTTA TTATTCTGCT GTGAGATTAA CGTTATTAAG CACAAATGAA GAAATTGTTA GAGTCTATCC AATTAAAATC GAAAATGTTC CTAAATGGTT TACGGATTTA AATTTATTTA GAACGATTTC AGAGAATCGA GTTATTACGA GTGGCTGGAT TCAATTAGCT GAAGTTGAGA TCGTTACTCA TCCAGGGTAT GCCTATCAAC AGCTTTGGAA TTCTTTAACG CAATTGGGAA TGATCTTTTT CATCGTAATA GGCTTAGGGA TTGTTGTTAT TTCAATGGTT GTGAAAAGAG CCCTGTCTCC GCTGCAATCT ATTGTTATAA AAATGAAAGA AGTCTCAGAG AATAATTTTG ATACTAAATT AGCAAAACCA AAAACGAAAG ATTTAGAAGC AGTGATTTCT GGTATTAATT CAATGTCTTC GCAAATTTCA TTGAGTTTTA AAGCTCAAGT GCAAGAGGCT GAAAAACTAA GGGACCAAGT CTATCTTGAT CCAATTTCAG GATTGGGGAA CCGTTCATTT TTTATGGGCC AACTTAATAC GTGGTTATCT GAGTCTTCAA AAGGTGGTAT TGCAATATTA AAAGTTAACT TTATCAATAG GGTGTACGAG CAAGACGGTT ATGAAGCTGG AGACGATCTC GTTCATCAGT TGGCTAATTT ATTAAAAGCG ACACTCCCTA GTTCTAATGT CACATTAACT CGTTTAAATT CCTCTGAGTT TGGTTTCATT TTCCCTAACA TAGAAGAAGT TGAATTAAAG CTTGCAGCTG AAAATATTAT TGCTTATACG CAAGATATTA AGGGCGATCC GACGGCGACT GCGCCTGTTG ATGCTGAGCT TGGTGTTGTC TTTAATGAAA ATAGAAAAAC AACAACAGAG ATCCTTTCTT TAGTCGATAA CGCATTAACT CAAGCGCATG CTACCCCTGA ATTATTGTTT GGGTTTATTG CTGATGAAAG TCAACATCAG TTAATGGGTA AACAACAATG GAAGCAATTT GTTGATGAGG CGATTAGTGA GCAACTGTTT AATTTTACAC TTCAACTAGC AACCGCTCGT ATTGGTACTG TATTTCATCA AGAAGTGTTT TCAGCTATTG AGAAAGAGGG GCAACGTTAT TCTGCCAATC AATATTTGTT TGCTTTAGAG CAATTAAATG AAACAACCTC ATTTGATCAA TTTGTTATAA GCACAATGCT TGAGAGAATT AAAACCCAAG AGATAACACA ACCAGTGGCG ATCAATTTAG CGAATGGAAG TGTAGCAAAT CCAAGCTTTG TACGTTGGTT GACAGCTATT TTGAAAAAAA ATAAAGAAGC AATGCCTTTG TTGCACTTTG AGATCCAAGA AAGTGCTTTT ATTGAGAGTG AGGATCATAC GGCTTTATTA TGTAATGTTA TCCGAGAATC TGGTGCAGAG TTTGGTGTTG ATAACTATGG TCGTAATTTT GAATCTTTAG AATACATCAA AGTATTTAGA CCTAAGTACG TGAAATTAGA TTATTTATTT ACACACCAAT TGGATGACGA AAAGCAACGC TATATTTTAA CGTCAATATC AAGAACGGCA CAAAGTCTGG GTATTACAAC GATTGCCTCT CGTGTTGAAA ATAAAGAGCA ATTAGAGTTG TTATCTGAGC ATCATATTGA TGTTTTCCAA GGTTTTTTTG TTAATGAAAA AGTGAAGGAT GAGTAG
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Protein sequence | MTLYKQLVSW MTAVFLLLLI SVFAIEFRTT QTFLENQQRS EVNNTINSMG LALAPYLENE DKVAAESVIN ALFDGSYYSA VRLTLLSTNE EIVRVYPIKI ENVPKWFTDL NLFRTISENR VITSGWIQLA EVEIVTHPGY AYQQLWNSLT QLGMIFFIVI GLGIVVISMV VKRALSPLQS IVIKMKEVSE NNFDTKLAKP KTKDLEAVIS GINSMSSQIS LSFKAQVQEA EKLRDQVYLD PISGLGNRSF FMGQLNTWLS ESSKGGIAIL KVNFINRVYE QDGYEAGDDL VHQLANLLKA TLPSSNVTLT RLNSSEFGFI FPNIEEVELK LAAENIIAYT QDIKGDPTAT APVDAELGVV FNENRKTTTE ILSLVDNALT QAHATPELLF GFIADESQHQ LMGKQQWKQF VDEAISEQLF NFTLQLATAR IGTVFHQEVF SAIEKEGQRY SANQYLFALE QLNETTSFDQ FVISTMLERI KTQEITQPVA INLANGSVAN PSFVRWLTAI LKKNKEAMPL LHFEIQESAF IESEDHTALL CNVIRESGAE FGVDNYGRNF ESLEYIKVFR PKYVKLDYLF THQLDDEKQR YILTSISRTA QSLGITTIAS RVENKEQLEL LSEHHIDVFQ GFFVNEKVKD E
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