| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II1081 |
|---|
| Symbol | |
|---|
| ID | 6962429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 1177432 |
|---|
| End bp | 1178340 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643382322 |
|---|
| Product | HTH-type transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002265352 |
|---|
| Protein GI | 209809813 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTTA TTCAACTCTC TCGTATTAAT TTTAAACAAC TGACGGCTCT GCATGTAATG
CTGTCTACCC ACAGTGTTAC TCAAAGCGCT GAAATTTTAT ACATGAGTCC ATCCAGTGTC
AGTAAAACGT TATCGCAATT ACGATCATTG CTTGGTGATG AACTTTTTTA TCGCGATGGT
ACGCAACTTA TCCCAACGGC TTTTGCGCTA AAAGTGGGGC CGACAGTGCA CCTTATTTTA
AACAATATGA ATGGATTGTT GAATCAGTCA TCTTTTGAAC CAAAGGCATT TACGGGGAAG
TTTTCATTGT CTATGCGTGA GAGTACGCTT GAAATTTTTG CACCGATTAT CAGTGATATT
TTATCCAATC AAGCGCCTCA TGCTCACATT GATATTCACT CTAAAGAACA ACTTGGTTTC
GATGCGCTCT TGAGTGGGCA AGTGGATGCC ATTATTCTAC CGCATGATAA AAGTCAGCCA
CCAACGAATG AAAAGCAGTT AGTGTGGGAA ACCGTGATTG ACGATGAAAT GGTGTGCTTA
ATGAAATCAA ATCATCCATT AGCGACAAAA CCCCTTACGG TTGAGAATTA CTTAACGTAT
AAGCACATTG GTATTTTTGA TAAAGAATTA AATCAGCCTT ATTTTGAGCA GTTGCTAACG
CAGCAACATC AACCGAGAAA CATGGCAATG TCAGTGGCTG ATTTTGGCAG TGCGGCGGCG
ATGTGCCATC ATTCTGATTT TTTATTTACC TGTTCTAAAA AGTGGTTTGA AGTAGCAAAA
AAAGCGCAAG ATTTAATTGA AAAACCGCTG CCTTTTGGTT ACGGACAGGT TGTTTACAGT
GTGGTTTATA ATAAGTTAAG TTTGAATGAC CAAGCGTTGA ACTGGTTATT GAATCGCATA
AAGAATTAG
|
|---|
| Protein sequence | MDLIQLSRIN FKQLTALHVM LSTHSVTQSA EILYMSPSSV SKTLSQLRSL LGDELFYRDG
TQLIPTAFAL KVGPTVHLIL NNMNGLLNQS SFEPKAFTGK FSLSMRESTL EIFAPIISDI
LSNQAPHAHI DIHSKEQLGF DALLSGQVDA IILPHDKSQP PTNEKQLVWE TVIDDEMVCL
MKSNHPLATK PLTVENYLTY KHIGIFDKEL NQPYFEQLLT QQHQPRNMAM SVADFGSAAA
MCHHSDFLFT CSKKWFEVAK KAQDLIEKPL PFGYGQVVYS VVYNKLSLND QALNWLLNRI
KN
|
|---|
| |