| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II1061 |
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| Symbol | |
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| ID | 6962372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 1155040 |
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| End bp | 1156281 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 643382304 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002265335 |
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| Protein GI | 209809796 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.648754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAAAA TTGATAACGC GAAGAATATT ACTTACCTAA TCTCTCAATA TATTGAAGGC
AGACTATTAA TTAAAGGTGC CTTTAAAAAT GAAAAAGAAG TGAATGGAAT CGTAGAGAAT
CTGAGTAAAT TAAGGTATAG CACTTATGGG AATACGAATA GAACAGATAG AACAGATAGA
ACAAACCATA TTATAGGCTT TCTTTACGAC ATTAACTACG ATTTACCCTC TTTGATTAGG
CGCGGTGGTG ATAGTTACTA CCGTTCATAC AATGATGAAT TCCTCTTTAC AACTCGCCCT
GTTGATGATT ACAAAAAATT TTTTTCTAAA GATGCATGTG AGGTTCAAAA AACATGCTCA
TTATTTTCGA GTGAATTTTC ATTAAAAGAT AGAATTCTTG TTTCTAACAT TTATGACAGT
TATTTTGATG AGAGCAAATC AGTTATATCA ATATCATCAC CTGTTTATTT TCTTGGTAAT
GTCATTGGTG ATTATAATAT GGATGTAAAT ATAGCCAGTG ATTTCTTATT AAATAAAAAC
ATCAAATATA TGGTGGATAA AAATTTAAAG AAAATAATTA CGCTAGAGCA AAAAAACATA
TTTTTTAGGA ACTTTTCATA CTCTATAGAG CGAACAATTA GTAATAATTT AGTTATAAAA
TATAATATTC CTATGTATAT CTTTTTCAAA GATACGTGGT TTATTTTCTT TTTATTCGTT
TTTATTTCTT ATCTATTTTT AGTGAAAAAC ATCAAAATTT CAAATAGTAA GAAAGAGTTA
AGTGAAATGA GCGAAAAATC CAATATGGAT GAGTTGACTA AAATTTCAAA TCGAACGCTT
TTATCCAAAA TAAAAGAGAA AAATGATATG GATGATTGTC TGTCTGTGAT CTCGATTGAT
GGTAACAACA TAAAGAAGAT CAATGACTCG TTTGGCCATC ATATTGGTGA TGAAGCGATT
AAACATATTG CGTCGTCAAT GCAATTTGTC TTTAGAGAAA ATGATTACTT GTTTAGAATC
GGAGGGGATG AGTTTCTGGT CATTTTAATG AATTGTCCTT TAGATAAGGC TCAAGAACTG
GGGTATAAAT TAAAAGAAAA CACAAAAAAT AAACCTTTTA TTATTAATGA TTTATCAATA
ACTATATCAA CGGGGATTGT TAATAAAGAT AAGAACATGA CCATTGACGA AGCTTTGAAA
TTGGCGGATG TTCAGCTCTA TAAAGATAAA AGAAATCAAT AG
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| Protein sequence | MNKIDNAKNI TYLISQYIEG RLLIKGAFKN EKEVNGIVEN LSKLRYSTYG NTNRTDRTDR
TNHIIGFLYD INYDLPSLIR RGGDSYYRSY NDEFLFTTRP VDDYKKFFSK DACEVQKTCS
LFSSEFSLKD RILVSNIYDS YFDESKSVIS ISSPVYFLGN VIGDYNMDVN IASDFLLNKN
IKYMVDKNLK KIITLEQKNI FFRNFSYSIE RTISNNLVIK YNIPMYIFFK DTWFIFFLFV
FISYLFLVKN IKISNSKKEL SEMSEKSNMD ELTKISNRTL LSKIKEKNDM DDCLSVISID
GNNIKKINDS FGHHIGDEAI KHIASSMQFV FRENDYLFRI GGDEFLVILM NCPLDKAQEL
GYKLKENTKN KPFIINDLSI TISTGIVNKD KNMTIDEALK LADVQLYKDK RNQ
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