| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0952 |
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| Symbol | |
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| ID | 6962274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 1041346 |
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| End bp | 1042596 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 643382211 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002265242 |
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| Protein GI | 209809703 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.343928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCAT CTTTGTTCTA TTACAATGCA TTATCGATTG AAATTTTAGA AAAGAAAATT
AATATTAAAT ATCAAGAGCT AGTGGATATA ACTAAGCGAA CTCATAGCTA TTATATTAAT
GCAAATGAAA CAATAAGGAA CTCGGGTGTT TATAAAGAAG ACAATAACGT AGGTGTTATT
GTAAATAAGA CCGGAAAGGT AAAAGTATTA TCACCAGCAA TAAGTTTATT GTATCAAATT
TTATCTGAAG TTATGAATAA AAAATATATA TGGACGGTTG CTATTTTTGA AAAAATTCAT
GATGTAGATG ATGAATATAC GGGAAATGCC TACTATAAAC CGTTAAGAGA TAATTATATT
AAAATTAATT ACGAATCAAA AAATGATACA TTAATGTTAG ACCGTATAGT AGAACTAGAA
GGTTTAAATG AAACTTATAA AGGGTTTCAT AATGATGATA TAAGAATAAC AGATGTTTAT
AAAGAAAACT TATCAAATGA AAAAATATAT TCTGTTATAT ATCCGATCTA TTTAAATTCA
GACTTAGTGT CTGTAATTAT TGTTGATATT AAAGACGGTT GGAACGATTC ATTAGTTAAT
GACTTTAGTA ATAAAAAATG GAGATATATT ACTGAAGCTA AAGGATTTGA TTGGGCTACA
TTTAATATAA AAATACCGTA CACATTAAAT AATGCATCAT TAACTGTGAG TATAGATATA
TTCAAACTGT TAGCGATTAG TTTTTATATT ACTTCTGTTA TTTATGTATT TGCGACATTT
TTATATCGTT TTTATCTAAG AATTCACCGT GTTCAATGTA ATGATCGGAT GACCGGTTTT
TTGCGTCGAG ATTTTATTGA GAATAAATTG AAACGAGTAG AGAAAGCTTT TTTCCTAATT
ATAGATATAG ACTACTTTAA ACTAGTTAAT GATAACTATG GACATGATGT TGGTGATCAA
GTCATCAAAG TCGTAACCCA ACGTATAAAA GAGAGCATTA GAGATCATGA TATTGCGATT
CGGTGGGGTG GTGAGGAGTT TGTTATTATT TTCTATCAAA TGGATTTTAA TTCTTTTAAA
AATAAAGCTG AAATGATTAG AGCAAGAATA GAAAATGAAC GAATAGAAGA TATGGATATT
ACAATTTCTA TTGGAGGCTC TGAACAGCAA GAATCTGAAT TGGCTTTTGA AGCGATAAAA
AGAGCAGATA GGGCCCTTTA TCAATCAAAA AAATGGGGCG TAATCGTGTG A
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| Protein sequence | MFSSLFYYNA LSIEILEKKI NIKYQELVDI TKRTHSYYIN ANETIRNSGV YKEDNNVGVI
VNKTGKVKVL SPAISLLYQI LSEVMNKKYI WTVAIFEKIH DVDDEYTGNA YYKPLRDNYI
KINYESKNDT LMLDRIVELE GLNETYKGFH NDDIRITDVY KENLSNEKIY SVIYPIYLNS
DLVSVIIVDI KDGWNDSLVN DFSNKKWRYI TEAKGFDWAT FNIKIPYTLN NASLTVSIDI
FKLLAISFYI TSVIYVFATF LYRFYLRIHR VQCNDRMTGF LRRDFIENKL KRVEKAFFLI
IDIDYFKLVN DNYGHDVGDQ VIKVVTQRIK ESIRDHDIAI RWGGEEFVII FYQMDFNSFK
NKAEMIRARI ENERIEDMDI TISIGGSEQQ ESELAFEAIK RADRALYQSK KWGVIV
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