| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0951 |
|---|
| Symbol | |
|---|
| ID | 6962273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 1040008 |
|---|
| End bp | 1041324 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 643382210 |
|---|
| Product | membrane associated GGDEF protein |
|---|
| Protein accession | YP_002265241 |
|---|
| Protein GI | 209809702 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0362084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGA TAATGGATAA TACTTATTTG AAGGTATTCT TATTCTTGTT TCTATTGTAT
TTTTGTATAT TATATCAATA TAACAAATTA GAAGCTAATT CATTTAGAAT GGAGTTTCAT
GAAAAAATCA CAAAGCTGTA TGATACAGTT AGAAAGATTA CGCCTTTCTA TTTAAATACA
ACGATGATAG ATCTTAATAA AGGAACTTAT GTACGTGATA ATGTTTCTAT TATGGTTGAT
GAAGACAGTA AGGTGAAAAA ATTATCTAGT GGTATTAATT TATTAGAGGC AGAGTTGAGA
AACTATATTG GTGATGATTA TTGGAGTATA GCGATCCTAG AAAGACTTGA ATCTAATATT
AACATTGCTC ATTTTAAGCC ATTGCATGAA GTTCATGTTA GATTGAACTC TAAAGAAGTA
TCTGATTTAA GTTGGATTGA TAGGATTCTA GATAACGAAA ATATGTCAAA AGGTTATCAA
GCTTTTGCTC AATGTGATCT TAAATTAACA GAACCTTATA TAGAGCAATT TACAGGTAAA
AATGTTAGAA GTATATTTTA TCCAATTTAT GAAAATAAGA AATTAAGAGC TATATTTCTT
TTGGACATGA AAGTCGGTGT TTTTTCAAAT TGGTTAAATG ATTTTAATAA AAAAAGATAC
AGTTTTTTGA ACTATGACAG TGATCATGTC CTCTCCTTAT CCAGTGATTT GATTGATATA
CCTTGTACTC CGATAAGTAA CAAAATAATT CTATCTATAA ACATGGTGAG TTTATTGATG
TTAAGTTTAG GTGTTTCCTT TGTTGTAACA TGTGTGCTAT TTTTAATTAA GAGTTCTCTA
TATCGATTTC TATATTATTA TCGGTTAGAT AATATGACAG GATTATATCT ACGTGATTTT
CAGGAAGAAA AACTGAATCG AACTTCAGGA AAATCGATAA TCATCATCGA TATTGATAAT
TTTAAAGCAA TTAATGATCA ATATGGTCAC TTTCACGGCG ATCTAGTAAT TAAAGAAGTT
TGTCATCGAA TTAAAAAACA CGTGAGAAGA GGTGATATGG CGATTCGATG GGGTGGTGAA
GAGTTTATTA TTGTTCTTAA TCATATATCG GATAGTGAAC TACTGAAACG AGCAGAGGCG
ATTCGAAGGT CAATCGATGT GAAGCCTATT GCTAGGATCT GTGTTTCAGT TTCTATTGGT
GCGACAATGG GAAAAAAAAT GTCTTTTAAA AAAGCATTTA AGATAGCAGA TACTGCATTA
TATCAATCAA AAAACTCTGG TAGAAACAGG GTTACTGTAT TAGAAGATGT AATCTAA
|
|---|
| Protein sequence | MRKIMDNTYL KVFLFLFLLY FCILYQYNKL EANSFRMEFH EKITKLYDTV RKITPFYLNT
TMIDLNKGTY VRDNVSIMVD EDSKVKKLSS GINLLEAELR NYIGDDYWSI AILERLESNI
NIAHFKPLHE VHVRLNSKEV SDLSWIDRIL DNENMSKGYQ AFAQCDLKLT EPYIEQFTGK
NVRSIFYPIY ENKKLRAIFL LDMKVGVFSN WLNDFNKKRY SFLNYDSDHV LSLSSDLIDI
PCTPISNKII LSINMVSLLM LSLGVSFVVT CVLFLIKSSL YRFLYYYRLD NMTGLYLRDF
QEEKLNRTSG KSIIIIDIDN FKAINDQYGH FHGDLVIKEV CHRIKKHVRR GDMAIRWGGE
EFIIVLNHIS DSELLKRAEA IRRSIDVKPI ARICVSVSIG ATMGKKMSFK KAFKIADTAL
YQSKNSGRNR VTVLEDVI
|
|---|
| |