| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0940 |
|---|
| Symbol | |
|---|
| ID | 6962263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 1027211 |
|---|
| End bp | 1028221 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643382201 |
|---|
| Product | HTH-type transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002265232 |
|---|
| Protein GI | 209809693 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC AAAACGCAAT TTACCTCGTT CGAGTGCATA CAGCAAAAAT GCTGATTGAC
CACGCGATGA AGCATTATGG CTTAGCCGTC ACTGATTTTA ATATGCCACC GAGTTTATTT
AACTACGAAC TGAAATTAAT GCCACTTCGA GATCTTGAAA CCTTACTGTG TAAGATAGAA
AATTTAACTC AAGATCCGGC CTACACCGCT AAATTAACTC AGTCAAACAG CCTGAAACAG
TTTGGTCCTT TTGTGCAATT ATTAGCAAGC TCAACCAATT TAGGTATGGC AATAAAATGC
ATGAACACCA TTCATAATGC ACTGCAATCG GGAGTTCAAG TAAACATGCT GTTGAGCGGT
TCGATCGTTA AATGGCGAAT ATTAACACCG ACTCTTCTCC CTCAAGCTCG CATCCATGAA
AGCATTTTGG CGGCGGGCTC TTTCTTACGT TTACTCAAAC TGTTTCATGG AGACGATTAC
CAACCTATTG CTATTCATCT AGCAGGAACC CCAATAGGAA AACACGGTGA AATTGAAGCC
ATTTTTAATT GCCCTATTAC ATGGAACAGC CCAAATACTC AAGTTTGGTT TCCAGTAAAA
GACATTACTT GTCCACGACG TTTCACACTA CCAACACCGC AAGTAAAAGC CTTTACGGTA
GAACAAGCAA TGAGTTATAT GCTTATTCCT CAACCTCAAG ACCTTATAAA AGTGGTTTTT
GAGCTCACAA AATACGCTCT TTTCTTTGGT TACCCAACAC TTGAGTTCGT TGCCGATAAA
GTCGGTATGA AACCACTCAC TCTACAACGT CGATTACAAG AGCAAAGCAT TTCGTTTACC
AATGTTGTTC AGCACAGCGT ATGCGATGAA GCCATTACAT TAATGACCTC GCCACTTAGC
ATGGAAGAAA TATCACAACG GGTTGGTTAT AAAAATGTTG CTTCATTTTC AGTCGCGTTT
AAACGACTCT ATGGAGTCAC TCCTCAGCAT TACCGCAAAG AAAACCTTTA A
|
|---|
| Protein sequence | MAKQNAIYLV RVHTAKMLID HAMKHYGLAV TDFNMPPSLF NYELKLMPLR DLETLLCKIE
NLTQDPAYTA KLTQSNSLKQ FGPFVQLLAS STNLGMAIKC MNTIHNALQS GVQVNMLLSG
SIVKWRILTP TLLPQARIHE SILAAGSFLR LLKLFHGDDY QPIAIHLAGT PIGKHGEIEA
IFNCPITWNS PNTQVWFPVK DITCPRRFTL PTPQVKAFTV EQAMSYMLIP QPQDLIKVVF
ELTKYALFFG YPTLEFVADK VGMKPLTLQR RLQEQSISFT NVVQHSVCDE AITLMTSPLS
MEEISQRVGY KNVASFSVAF KRLYGVTPQH YRKENL
|
|---|
| |