Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0653 |
Symbol | |
ID | 6962040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | - |
Start bp | 702984 |
End bp | 704693 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643381933 |
Product | putative extracellular solute-binding protein |
Protein accession | YP_002264971 |
Protein GI | 209809433 |
COG category | [R] General function prediction only |
COG ID | [COG4533] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGTC CTCGTTTACG GAAACAATTT GATAAATTAT ACGATCGCTA TATTAATAAT ACGTCTGGTA CACAGATTGA TGAGATAGCT AATTTGCTTT GCTGTACACG ACGTAATACC CGTATGGTAT TAAATAAAAT GAGTGACGAA GGTTGGATCT CATGGACTCC TGCGGTTGGA CGAGGAAAAA GTTCAGCATT AGCATTCTTT TCTTCTCCTG AATCAGTAAA TTATGGGCTT GCGAAGAGAT ACATAAATGA AGGTAAGCTA GATGTTGCTC TTGATATTTT AGAAGGCAAT CAAGATGTAT TGCTTGAATT GATCCATGGT GCTTTAGGGG TTTCTCATGA AAAAGGAAAG CAAGTTGTTA AGCTTCCTTA TTATCGTCAG TTACAAACCT TAATGCCATC TCTTGCAATT CGTCGTTCAG AGCAGCATTT AATGCAGCAA CTATTTAATG GATTAACTCA ATTAAATAAA CGTGGTGATA TTGAGGGTGA TATTGCCCAT CATTGGGATA TGTTAACACC AACACATTGG CGATTTTTCT TAAGACCAAG TATTGCTTTT CATGATGGAA AACCATTAAC GTTTCAGGAT ATTAAAGATA CATTTTTTGC ATTATCGTCT AATTTTGTGT TTAGTCACAT ACAAGAGGTC ACGAATCCAA ATCTTAATGT AGTTGATTTC ATTCTGACGA CTGACGATTA TTACTTTGAT AGTAAATTGA CTCAGTTTAA TGCGAAAATA ATTCCAAATA CGGCTCATGA ATCAATCACC TATGCTCGTT CTCCTATTGG AACCGGGCCA TACAAGGTCC GTGAAAATTC AGACAAAAAA CTCACGTTAA TCGCAAATGA ACATTACTTT GGTTATAGAC CATTGATTGA TTCTGTTGAA GTATGGACGT TACCTAATAT CGCACCAATT CAATTGAAAT TAGGTTTTGA AGTTTCTGAA GGGGATCACT CTGTTAGTTA TGGTGAACAA GTAGATGCAG ATAGAGGGTG CACTTATCTA CTATTAAATC GTCAGTCAGG ATTGGCTGTT AATTCGGATT GGAAAGAATA CTTATCGCAA ACCATTACGC CGTTACTATT ATTAAATGAA TTACAAAATG CGAATATGAA TGGTATTGGA TTATTTAACG CTTACGGGTT ATTACCTGGG TTACAGCATT GTTTGAATAG AAAGAAAATC GCTTTTTTTC AACCAGAAAA AGGAAGCGTC GTCAGATTAG GGTATGAAAC AGAACATCCT CTCTATCCTT TACTTGGGGC TATTATTAAA AGACGTCTTG CATTGGACGG TATCAAACTC GTTATAAAAG AGTTTGATAC GATGGAATTA TTAGATTCCG AATGTACAGT ACACATTGAT ATTTGGTTAC GCGGTATGAG TCTAGGAACA AATAGACCAG AAGCACTATT GTCGTGGTTA TTTGCTTTTA ATGAAATAGA AAGAGCAATG CCTAAAAATG AATTTGAGCA TATTTCACAA TTGATATCAG AATGGCAATC AGAACCACAT CAATCTTTCC CTGTGAATCA AATTTGTCGA TATTTAGTGG AAACAAATCA GATAACGCCT TTATTTCATG GATGGATGGG GATCAGTGAA GATGCAACAA ATAGCATTCA AAATGCGTCT TGTAATGGAC TTGGTTGGTT TGACTTCGAA AAAGTGTGGA TTAAACCGGA AATGAACTAA
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Protein sequence | MSSPRLRKQF DKLYDRYINN TSGTQIDEIA NLLCCTRRNT RMVLNKMSDE GWISWTPAVG RGKSSALAFF SSPESVNYGL AKRYINEGKL DVALDILEGN QDVLLELIHG ALGVSHEKGK QVVKLPYYRQ LQTLMPSLAI RRSEQHLMQQ LFNGLTQLNK RGDIEGDIAH HWDMLTPTHW RFFLRPSIAF HDGKPLTFQD IKDTFFALSS NFVFSHIQEV TNPNLNVVDF ILTTDDYYFD SKLTQFNAKI IPNTAHESIT YARSPIGTGP YKVRENSDKK LTLIANEHYF GYRPLIDSVE VWTLPNIAPI QLKLGFEVSE GDHSVSYGEQ VDADRGCTYL LLNRQSGLAV NSDWKEYLSQ TITPLLLLNE LQNANMNGIG LFNAYGLLPG LQHCLNRKKI AFFQPEKGSV VRLGYETEHP LYPLLGAIIK RRLALDGIKL VIKEFDTMEL LDSECTVHID IWLRGMSLGT NRPEALLSWL FAFNEIERAM PKNEFEHISQ LISEWQSEPH QSFPVNQICR YLVETNQITP LFHGWMGISE DATNSIQNAS CNGLGWFDFE KVWIKPEMN
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