| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0513 |
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| Symbol | |
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| ID | 6961923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 571862 |
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| End bp | 573202 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643381804 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002264842 |
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| Protein GI | 209809304 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGAATA AAATGCCGAA TAGTAAACAA AATTATGCAC TTACTCATGA AACTTTTGTT
TTCTTGAAAA TATGGGGGAT AATTCTGTGT GTACTTTGGG TATTCTATTT TTTCTTTAAT
ATCGTTTCTT TGCATCGATT AGAGCGTGGT GTGGTCGAAG ATTACAAAGG CATTTATTCC
ATCAGTCGTC GTTTCTCATC TTATTATAAT AATGTCGATT CTATCTTTTT AGATAAAGGT
GAATACAACC GTAATGGCGT CCATATTGTT GTTAACGCGG ATACTGAAGT AAAAGTGTTG
TCTACTGGTA TTAAAAAATT ACGGACCGAA TTAGAAAAGT TAATTGGAAA TAGCTTATGG
ACGATTGCTG TTTTTGAAAA TCCGTCTCAA TATGTGCATT TTGATCCATT GAGAAAAAGC
TATGAAATGT TTTATGACGG AGTGAATAGC GAAAATGTCA TCGAAGAAAT TGTAGATAAA
GAAAGTTTAA ATGCCACCTA TCAATCTTTT TATGGGTGTA ATTTAAAATT AACAGAAAAG
TATACAGAGA AAGGCATGAA TGAAATCATT CGTTCTGTCT ATTACCCGAT ATACAATAAT
AAACACCTTG ATTCATTATT AATTGTTGAT ATTAAAGCGT CGTTACTTTC TGATAAAGTT
AGGATATTTA ATGATGAAAA TAACACTGTT ATTAACAGCA ATAGCATGAA TAACAGTTAT
CAAGAATCGA TGCTTTTACC TTGCTCAGCT CAAGATGAGA TCACACTAGG GATACGATTG
ATCGATCTTA TCAAAGCGAT CTTAATACCT TCGTTATTAT TGTCGTTAAG TTTTTACCTT
TTACGATTAA ATTTCAATCA TCGTAAAAAA TTAGTGCAGT TTGATCGCAT GACTGGCTTT
TATCGACGTG ATTTTTACGA GAAACGTTTA CAGAAAAAGA CATCGCATTC GCTACTTCTT
ATTGATATTG ACCATTTTAA ACGTATTAAT GATACTTACG GGCATAAAAT TGGTGACGAA
GTGATCCAAG AAGTTGCCGT ACGTATTTTG AATCAAATTC GCCCTAAAGA CATCGCGGTT
CGTTGGGGAG GCGAAGAGTT TATCGTCGCT TTTGAGCCCT TAACAGACGA TCAGTTAGCC
ATTAAAGCGG ATCTAATTCG AGCTGTGATT GAAAAGCATG AGATTAAAGG GATTGAAGTT
ACGATTTCTA TCGGTGGTGT GGTAAGCCGA GATACGTCAT TTAGTTATGC TTACAAACGA
GCGGATGCCG CACTCTATAC ATCGAAAGAG AGTGGACGAA ATAAAGTGAC TATTGTGAGT
GACTTTGTCG AGGTGCCATA A
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| Protein sequence | MRNKMPNSKQ NYALTHETFV FLKIWGIILC VLWVFYFFFN IVSLHRLERG VVEDYKGIYS
ISRRFSSYYN NVDSIFLDKG EYNRNGVHIV VNADTEVKVL STGIKKLRTE LEKLIGNSLW
TIAVFENPSQ YVHFDPLRKS YEMFYDGVNS ENVIEEIVDK ESLNATYQSF YGCNLKLTEK
YTEKGMNEII RSVYYPIYNN KHLDSLLIVD IKASLLSDKV RIFNDENNTV INSNSMNNSY
QESMLLPCSA QDEITLGIRL IDLIKAILIP SLLLSLSFYL LRLNFNHRKK LVQFDRMTGF
YRRDFYEKRL QKKTSHSLLL IDIDHFKRIN DTYGHKIGDE VIQEVAVRIL NQIRPKDIAV
RWGGEEFIVA FEPLTDDQLA IKADLIRAVI EKHEIKGIEV TISIGGVVSR DTSFSYAYKR
ADAALYTSKE SGRNKVTIVS DFVEVP
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