| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0480 |
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| Symbol | pspF |
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| ID | 6962578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 539767 |
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| End bp | 540789 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643381772 |
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| Product | psp operon transcriptional activator PspF |
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| Protein accession | YP_002264811 |
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| Protein GI | 209809273 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAAG ACAGTTTAAT TGGTGAATCT GATGCGTTTT TATCGTCATT GGATCATGCC
TCCCAACTTG CAGGCATTGA TAGACCTATT TTAATTCTTG GTGAACGAGG AACGGGTAAA
GAGTTAATAG CACAACGTCT TCACTTTTTA TCCAAACGAT GGGACGAACC CTTGATTAGT
TTGAACTGCG CAGCACTCAG TTCAGGCACA TTAGATTCTG AATTATTTGG TCATGATGCG
GGGGCTTTTA CTGGCGCAAA ACAGCGTCAT CAAGGTCGAT TTGAACGAGC CGATGGCGGT
TCTCTATTTT TAGATGAGCT TGGTACTGCA CCTTTAACCG TTCAAGAAAA GCTACTTCGT
GTTATCGAAT ATGGAGAGTA TGAACGTGTC GGTGGTTCAC ACACCTTAAA AGCCAATGTT
CGTTTAATTT GTGCGACAAA TCAGAACCCA CAGGAGATGG TTGAGGAGAA AAAATTCAGA
GCGGATTTAC TTGATAGACT CTCTTTTGAT GTCATTCACT TGCCGCCATT GCGTTACCGC
GAGCAAGACG TACTCCTTCT TGCAGAACAC TTTGCCATCA AGATGTGCCA AGAAATGAAC
TTGGCATACT TTGCTGGTTT TTCCCGCTAC GCTCAGCATC AAATTTTAGA TTATGACTGG
CCGGGTAATG TTCGTGAATT AAGAAATTGC ATCGAGCGCG CTGTGTTTAA GCACAATCAT
GAAGAAGCAC AAATTGAATC AATACAAATA AACCCGTTTC TAACCCCATG GGAAACAACA
CCAACACAAG AGTCATCTTC GTCTATACTC ATTGAAGATA AACCGTTAAA CGAGGGTTAT
CACTTCCCTT TGAATTTAAA ACAATTTCAG TTGCAACAAG AAAAAGAATT GCTTGAACAA
TCACTTTCAA AAAGCCAATT TCATCAACGT AAAGCGGCTG AATTGCTAGG TATCACCTAC
CATCAATTTC GTGGACTCCT GAAAAAACAT CAATTATTAG CCACTAAAAC CGATATTTCT
TGA
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| Protein sequence | MRKDSLIGES DAFLSSLDHA SQLAGIDRPI LILGERGTGK ELIAQRLHFL SKRWDEPLIS
LNCAALSSGT LDSELFGHDA GAFTGAKQRH QGRFERADGG SLFLDELGTA PLTVQEKLLR
VIEYGEYERV GGSHTLKANV RLICATNQNP QEMVEEKKFR ADLLDRLSFD VIHLPPLRYR
EQDVLLLAEH FAIKMCQEMN LAYFAGFSRY AQHQILDYDW PGNVRELRNC IERAVFKHNH
EEAQIESIQI NPFLTPWETT PTQESSSSIL IEDKPLNEGY HFPLNLKQFQ LQQEKELLEQ
SLSKSQFHQR KAAELLGITY HQFRGLLKKH QLLATKTDIS
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