| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0452 |
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| Symbol | |
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| ID | 6961882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 513187 |
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| End bp | 514773 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643381745 |
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| Product | putative GGDEF protein |
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| Protein accession | YP_002264785 |
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| Protein GI | 209809247 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACAT TCTTAGATCG TATACAAGAG CAAGGAATTG ATCTTTCTGT CCTCTCCCAT
TCTCAATCAT TGGTTCTTTG GTATCACATA CTAGAACACA TGGCAGAGAG CAATGAAGAA
AAAGCCTACG CATTATTTAT GTGTTCAGAA TATGAAGTAA AAGCGGATCT TACAGAAAAA
AGTATCTGCC ATTTACAACG AGCATTAACA TTATTAGTTC TACCTACTCA TATTGATCTT
ATTTTACAAA TTTACTCTTC ATTGAGCTAT CGTCACATTG ATTTTGGTAA CTATCAAAAC
GCCTTATCGA CTTTAGATAA CCTCTCTAAA ATTGCTGTTG AGCATGGGAA AAGCGAATTT
TACATCCAAT CAATTCTGGG TATTGGTAAT CTTTGCTCCA TTTACGGCGA CCACTTAAAA
GCGCTCCGTT ACTACCAAAA ACTAGAATCT CTCAGTCATA TAATAGAAAG CCATAATTTG
GCTTTGCGTT ATCGCTTATA CATGATTGCT TGTCTCCTTG ATCTCAATAG ACTCTCCAAA
GCGAATAAAC TGCTTAAAGA GTGCCTCGTC ATACAATACC TCGTTGATGA TCCTCAATTA
GCCCCTCAAG TGGCTTTATA TTCAGCAAAA TTATTGCGCC TAAAAAATAA GCCTCAACTC
GCTTTAGATC AACTAATCTC TTTTAAAAAA GAATGCAAGT ACGCCAAAAT CTCTTTTCCT
TGGCTAAATA AATTGTTTGC TATCGAAGCC GCTAACTGCC TTATCCAGCT GCAACGAGGG
GAAATGGCAG AAGTGATTAT CAATCATCAA ATTCGAAGAA CATCAAAATA TTCTAATGGT
TATTACATTC GCCAATTGTT AGATATAAAA AGTAACGCCT TGGCTTCATA CGGCAATTTT
TCTGATGCAC TCACGTGTGA AAAAAAAGCG CAAAAATTAG CCGTCGATAT TATTCACTCT
TTTCCGATCA ATAAACTTGG TGGGCATGCT CTCAGACGTT TATTTCATTT AGAATTGCAG
TTACGCCTTA GTATTTCAGA ATCAGAAAAC ATTGAATTGA AAAAAGTGTC TGTTCAGCAA
AAAAATAAGG TCAAAAAATT ACAAAAAGAC GTACAGCACG ATAGCCTCAC AAAGCTCTAT
AATCGTCGCT GGTTTGAATC TGCGTTTATA AAAAAAATCC TTCCGACGAT CAAACATTAT
CAACTGCTTA TTATTGATAT TGATGACTTT AAATCCATCA ATGATGAATA CTCACACCTA
ACCGGGGATG TCGTATTAAA AAGACTTGGG CGGATTTTAC AGAAAAACTT AGATAATTCA
CATTATGCTC TTCGATACGG TGGTGAAGAG TTTCTATTGA TTATCCCATC AAACGACCTA
GAGGTAGGGC GACGCATTGC AGAGCAGTGT AGAGAGCTTA TCGCCAACGT TAGTTGGAAA
CATATTCTCA ATGATAGAAG TATTACGGTA AGTATTGGCC TTGCTATAAA TACAAATAGC
GAACCTTGTA AATCTACGTT TCTGCGTGCA GATAAAGCAT TGTACAAAGC AAAACGCTCA
GGTAAAAACA AGGTATGTAT TTACTAA
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| Protein sequence | MDTFLDRIQE QGIDLSVLSH SQSLVLWYHI LEHMAESNEE KAYALFMCSE YEVKADLTEK
SICHLQRALT LLVLPTHIDL ILQIYSSLSY RHIDFGNYQN ALSTLDNLSK IAVEHGKSEF
YIQSILGIGN LCSIYGDHLK ALRYYQKLES LSHIIESHNL ALRYRLYMIA CLLDLNRLSK
ANKLLKECLV IQYLVDDPQL APQVALYSAK LLRLKNKPQL ALDQLISFKK ECKYAKISFP
WLNKLFAIEA ANCLIQLQRG EMAEVIINHQ IRRTSKYSNG YYIRQLLDIK SNALASYGNF
SDALTCEKKA QKLAVDIIHS FPINKLGGHA LRRLFHLELQ LRLSISESEN IELKKVSVQQ
KNKVKKLQKD VQHDSLTKLY NRRWFESAFI KKILPTIKHY QLLIIDIDDF KSINDEYSHL
TGDVVLKRLG RILQKNLDNS HYALRYGGEE FLLIIPSNDL EVGRRIAEQC RELIANVSWK
HILNDRSITV SIGLAINTNS EPCKSTFLRA DKALYKAKRS GKNKVCIY
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