| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0403 |
|---|
| Symbol | |
|---|
| ID | 6961839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 453450 |
|---|
| End bp | 454661 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643381698 |
|---|
| Product | putative membrane associated signaling protein |
|---|
| Protein accession | YP_002264740 |
|---|
| Protein GI | 209809202 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3452] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0116086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACTTTC AAATTAGGAA AAAATCAGTG AAATTGCTGT TATTTTTAAA TAGAAAGGTA
ACGTTATTTT CAGCACTAAT CAGTAGTGTT CTACTTATCG TGTTTGTTGT TGAAGAACTT
CATACAAAGC AGTACATCTA TTTAAAGAAT CAAGTAAGCA GACAAGCAAA AGAAGAGTTG
GCGATTGTAC GAGCAAAGCT GGAAGCCGCC ATTCATTCGG ATATCTTTAT TGCGAATAGC
TTAGCAACAT TAATTACAGT AAACCCAAGA ACAACGCTCA ATGAATGGAG TCCCATTGCT
GAAGAGCTTT ATCGAGATTC AAGCTATATC CGTAGTTTAG GCGTTGCTCC TGATGATGTT
GTTGAATATG TATTTCCTTT AAAAGGGAAT GAAAGAGCGA TTGGATTAAA TTTCAAACGT
GTGCCAGAGA GATGGCCTGG CATTAATATG GCACGAGAAA TAGAAAATAT ATTCATTGCC
GGACCCGTTG CCTTAGTGCA GGGTGGAGAT GCTTTTATTG TTCGAATGCC TACTTTCTTA
GATCCTCCCA CTAATCGTAT TTATTGGGGT TCGGTCAGTC TTGTTATTGA TAACGAAGCT
CTTTTTTATG GGACAGGTTT ATATAAACTG AAAGAATCTT ATCAAGTAGC CGTAAGAGGA
AGACACAGCT TAGGCAGTGA AGGTGAGGTT TTTCTTGGGT ATTTAGATAC GTTTGTTGAG
CCAACGGCGA TTGAAACGGT GACATTACCT TATGGTAGCT GGCAAATCGC AATAAAAGGA
CAATCATTAG AAAGTATATT CCCGTGGTAC CGAATAAATT TACTTCGTAT TATTGGTTAT
TCATTCTTTG GTCTTGCTTT GCTTTCCTTG ATTGTCATTT ATCGACTATA CGTGACAGCG
ACAAGACGAT CTTTAGAAGA CGAACTTACC AAGTTGCCAA ACCGCCGTTA TTTTATGTTC
ACTTTAAAAA CCCTTTTTTT AAAAGGCCAT AAGAAAGGTG AGAAATTTAC GTTATTGAAT
TTGGATTTAG AGAAGTTTAA AGCGATTAAT GATACTTATG GCCATTCTGT GGGTGATTTC
GTTTTAAAAG AAGTGGCTAG AAGAGTGGCA ACAGTGCTAC GCAGTAACGA TATTGTGGCA
AGAGTGGGCG GTGATGAGTA TTTAATATTA TTGCCTCTAA CCTTTAAAAA CAAGATATTC
ATTTCATCAT GA
|
|---|
| Protein sequence | MYFQIRKKSV KLLLFLNRKV TLFSALISSV LLIVFVVEEL HTKQYIYLKN QVSRQAKEEL
AIVRAKLEAA IHSDIFIANS LATLITVNPR TTLNEWSPIA EELYRDSSYI RSLGVAPDDV
VEYVFPLKGN ERAIGLNFKR VPERWPGINM AREIENIFIA GPVALVQGGD AFIVRMPTFL
DPPTNRIYWG SVSLVIDNEA LFYGTGLYKL KESYQVAVRG RHSLGSEGEV FLGYLDTFVE
PTAIETVTLP YGSWQIAIKG QSLESIFPWY RINLLRIIGY SFFGLALLSL IVIYRLYVTA
TRRSLEDELT KLPNRRYFMF TLKTLFLKGH KKGEKFTLLN LDLEKFKAIN DTYGHSVGDF
VLKEVARRVA TVLRSNDIVA RVGGDEYLIL LPLTFKNKIF ISS
|
|---|
| |