| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0308 |
|---|
| Symbol | |
|---|
| ID | 6961764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 345063 |
|---|
| End bp | 346583 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643381609 |
|---|
| Product | putative response regulator |
|---|
| Protein accession | YP_002264651 |
|---|
| Protein GI | 209809113 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATT CTATTTTACT CTTTGAAAAT ATCCAACCGA CTTCTCTTGA AGCCATAAGA
GTATTACGCC TGTCACTCTC GAAAATTCTC GATCGCCTTG ATGTGCAAAA AACGGTTAAG
AATCCTTGCT TATTATGCTT CTCAGAGTGG AGCACCAACC TTGTTCTCCA CCCAAAGAAT
CCAAGTAAAA GCATCACTAT CGCATTAAGA AAAACCAAAC ATCATTGGCA ACTTGATATC
ATCGATGATG GTGAAGCGTG GGATCCAACG GCACAACCTA GCAATACCGA TATAGGCGAT
TTTTCATTAA AATGCGGTGG GCGTGGGATT GATATCATTC AAAGCCAAAC CAATACCACC
GCTTACCATT CTTTTGATAC TCATAACCTT TTTTCCATGA CATGGATCCG TGAAAACCAT
CAAAAACGCC CTCATATTTT AATCGTAGAA GACGACGTCA TTCAGTGTAA ATTATACAGT
GCTTACTTAA ATCAACAGTT TGATATTACT CTGACAAACA ATGGCAAAGA GGCCTTAGAT
TTTTTAAAAA ATAATACCGT CGATCTCATT GTTTCCGATA TTCAAATGCC AAAAATGGGT
GGATTAGAAT TACGTCAGCA TTTAGAGCAA GACAAAGACA TTTCGATTCC GTTTATCTTC
TTATCCCACT TACAAGACAC CACAACGGTG AATAGTGCCG TTGATTTGGG CATCGATGAT
TACCTAGAAA AACCCATTAA AAAAGATCAA CTTCTTTATA CTATTCAACG TGTTTTAGCT
CGTTTCAATC AAGTTTATCA ATCGCTATCC AAACAAGTTA ACCAAAAAAT CACGCACACA
TTATTACCAC AAATAGAGAT TCATTCTCCG CATTGGAAAC TCGCTATCCA GCAACGGAAT
ACCGGACATG GTGGCGGTGA TTTCGTGCTC TCAATGGATG ATGACGACAT CACTCAGATC
TTATTGGCGG ATGTCATGGG GCACGATGAA AGTGCGAAAT TCTTTGCTTA TGCTTATGCC
GGTTATATTC GAGGGTTAAT GCAAAACTCA GATCTAAAGC ACCCAGCACA ACTTTTATCT
ACCCTCTCAA ACAATGCATT CAAAGACCAA ATTTTGTCAC AAACGATGCT GACAAGTTGT
TGTGTGAGTC TTCTTAATTC AAACACGTTA GCAATCAGCA GCGCTGGACA CCCACCGCCA
ATACACATCA CAAATCGCGG CCTTAGTATC ATCAATGTTG AAGGTACATT GCCGGGGTTA
TTACCAAACA CAACGTACCA AGAAACTAAA ATCACCTTAC AACAAAAAGA ACGTATTGCT
TTTTTTACTG ATGGATTGTT TGAATCCGGA GATTCTTTAT CAGAACGAGA AACCCTTGAA
AAAGCAGTGA AACAACAGTT AATTAATACC TTTGATTTAC CTATCGAATC AGCAATGGAA
CAGATAATGC AGACCTTTGA TTCATTAGCC GGAACACCAC CAAATGACGA TGCTTTATTA
CTGATAATAG AAAAACAATA A
|
|---|
| Protein sequence | MTDSILLFEN IQPTSLEAIR VLRLSLSKIL DRLDVQKTVK NPCLLCFSEW STNLVLHPKN
PSKSITIALR KTKHHWQLDI IDDGEAWDPT AQPSNTDIGD FSLKCGGRGI DIIQSQTNTT
AYHSFDTHNL FSMTWIRENH QKRPHILIVE DDVIQCKLYS AYLNQQFDIT LTNNGKEALD
FLKNNTVDLI VSDIQMPKMG GLELRQHLEQ DKDISIPFIF LSHLQDTTTV NSAVDLGIDD
YLEKPIKKDQ LLYTIQRVLA RFNQVYQSLS KQVNQKITHT LLPQIEIHSP HWKLAIQQRN
TGHGGGDFVL SMDDDDITQI LLADVMGHDE SAKFFAYAYA GYIRGLMQNS DLKHPAQLLS
TLSNNAFKDQ ILSQTMLTSC CVSLLNSNTL AISSAGHPPP IHITNRGLSI INVEGTLPGL
LPNTTYQETK ITLQQKERIA FFTDGLFESG DSLSERETLE KAVKQQLINT FDLPIESAME
QIMQTFDSLA GTPPNDDALL LIIEKQ
|
|---|
| |