| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0156 |
|---|
| Symbol | |
|---|
| ID | 6961632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 182270 |
|---|
| End bp | 183169 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643381476 |
|---|
| Product | HTH-type transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002264518 |
|---|
| Protein GI | 209808980 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCA ACTCTTTGAA TATATTTGTA AATGTAGTTC AACACGGTTC TTTCTCTGCG
GCTTCTAAAA TCATGAATAT TCCAGTAGCT ACAGTTAGTA GACGAGTCAG TGAATTAGAA
AACCAGTTAG ATCAACAATT ACTGATACGA ACAACTCGAA AATTATCTGT TACCCACGTT
GGCCAATTGC TTTATCAACG CGCCTCTTCA GGGCTAAATG AAATATTTGA TGCCGAACAA
GCCATCAATG AAGAGCAAGA AGATCTAAAA GGTCAATTGC GTATCTCTAT CCCACCAGCT
CTTTATGTTT TTGATGACAT GTTCCACCAA TTCAATAATA CCTACCCATT AATTCAATTG
GATATTTTCA GTACGGTTCG TAAAACGGAT TTTATTGATG ATGACGTAGA TATTGTTATT
CGCGTGGGAA AAGTGAATTA TCAATCGGCC ATTGCGAGGC ATTTAGGTAA GTACCGTCAC
GTGATGGTTT GCTCACAAAA ATTCATCAAT AAATACGGTA TCCCAAAAGA TCCTACGGCA
CTTGCTAACT TACCGATTGC CGCATGGCGA TTTGGACACG GTCCTATAAC TTGGCAGCTA
GGTGAGCATT GCATTGAAAT TACCCCTAAA TTTTCATCCA GCGATTATGT ACATTCCCTC
TCAGCTATTC GCACTGGTGA AATGCTAGGA GAATTACCCC CAATGCTTGC GAATCCACTG
CTGAGATCTG GCGAATTTGT TGAAGTGCTT GCCGAATATC CTTTACCTGA AGTGGATTTA
CACATCATCT ACCCTTCAAG GAAGCACTTA TCTCGCTTAA GTAAAGTGTT CATCGATGAC
TTTATTCAGT TTTGTCGTAC CCATCAAAAA GGTGACTCTC TGTTTAATAT TTCACTGTAG
|
|---|
| Protein sequence | MDLNSLNIFV NVVQHGSFSA ASKIMNIPVA TVSRRVSELE NQLDQQLLIR TTRKLSVTHV
GQLLYQRASS GLNEIFDAEQ AINEEQEDLK GQLRISIPPA LYVFDDMFHQ FNNTYPLIQL
DIFSTVRKTD FIDDDVDIVI RVGKVNYQSA IARHLGKYRH VMVCSQKFIN KYGIPKDPTA
LANLPIAAWR FGHGPITWQL GEHCIEITPK FSSSDYVHSL SAIRTGEMLG ELPPMLANPL
LRSGEFVEVL AEYPLPEVDL HIIYPSRKHL SRLSKVFIDD FIQFCRTHQK GDSLFNISL
|
|---|
| |