| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2966 |
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| Symbol | malS |
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| ID | 6988611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 3212151 |
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| End bp | 3213815 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643381241 |
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| Product | periplasmic alpha-amylase precursor |
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| Protein accession | YP_002264291 |
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| Protein GI | 209696360 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0359773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAT CTGTTTGTGC AACGTTTATC TCCCTTTCGC TATTGGTAGG ATGTCAAAGT
ACGTCATTAA CCTCGACAGA TAGTTCTGAT TCAATATCAA CAGCTGATTC ATCAAATCAA
ATTGAATCAA CCACAAGCTC AAACAATAAC ACCGCTATTT GTCCTGTATT AGGCATTCAA
CCAGTGACTG TTTCTGTGTC TGATTTATGG GCAAATGGTG ATGTGATCAC CGATGCTTAT
ACTGGGAATA TTGCTCAGGT GGTTAATGGA GAGATAACGC TAACACCAAG TCGCCACAGT
GGTGGGGTAT TATTGTTGGA ATCAGAAGAA GAAAAAGCGC GCTTCTCTTG GGATGGTGCG
ACGTTCTACC ACATCGCAAC GGATAGATTC TTTAATGGGA ACAGTTGGAA TGATCACAGT
TATGGACGCC AAAGCACAAA AGAGGGTTTT CAGGGCGGAG ATATTGTTGG CTTAACAAAA
AAACTCGATT ACTTAGCCGA ATTAGGCGTT GATGTCGTAT GGATCTCCAC TCCTCTAGAG
CAAGTGCATG GGTGGTTACC CAATAAGAGC GGCAATTCTC CTGAATACCC TTATGCCGGT
GGTGCGACTC TCGATTGGAC GCAACTGGAT ACCAACATGG GCAGTGAGCA AGAAATGCGA
ACGTTTGTCG ACCTAGCGCA CCAATTGGGT ATGCGAGTGA TGTGGAGTGT GGATACGGCA
CCGCCAACAC CAACCTTATC GGATTTACAG CAATTTTCAA TTCAGCCGAA TAATCCGGAT
GCGTTACCAA GCTATTGGAG TGAATGGCAA CCACAAGAAG GTCAAAACTT AACACATTAT
TTAGATGCTT TTAAAAATAA GAATGGTGAG ATACCGGATT GGTGGTCAGA AGCATGGATG
GAAGAAAATA ATGAAAACGC GATCACGTTG CCTGCGTTTT TTGCGAATAA GCCGTCAACT
AAAGTAAAAA GCAGTGAAAA GACAAAAAAT GAGTACCTAG CTGGATGGAT GAGTGCATGG
GTGTCAGAGT TTGGGATTGA TGGTTTTGTT GTTTCTAATT CAACACCAGA GTTAACTCAG
AAGATCGAGC AAGAAGGGAA AGACGCTTTT ACCCTGTGGA ACAAAGACAA CGCGTACAAA
GCGTTAGAAA ATGCGTCTTT TCGTGTGATT GATTTACAGC AACAGAATTA CTTTAGCGAT
CAAATGCTGT CTTTAAAAAG CAATGATGAA CCGCACTGTC TCACTAAGCT TAATGCTGAG
TACGTAACTC AAAGCCAAGC TGAAAAACCA AGTATGACTC GATTGACTTG GTTTGATGGT
AAATCGTTAT CTGATTCTTC AGTGGGCAGT GTAAACGCAG ATAATTACGC GGATTACCGT
GATGCAGCAA CGGCGTTACT ACTTTCTCCT AATGCGGTTT CTATTTGGTA TGGGGATGAA
ACGGCCAAAA TGGGAGGGAT ATACAGTAAG ATGAATTGGA ATGAGATAAA AGATCAACGT
TGGTCGTTGC AGTCTCATTG GAAAAAGCTC ATCGAATTTA GAAATAATCA CTCATCAATT
GCGAATGGTG AGCATCAAGT GATCAAGCGT GAGCCTTACT ATGCGTTTAT TCGAAAGAAT
GAATCAGACA GTGTCATGGT GGTGTATACC GGTGAGAAAA AGTAG
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| Protein sequence | MKLSVCATFI SLSLLVGCQS TSLTSTDSSD SISTADSSNQ IESTTSSNNN TAICPVLGIQ
PVTVSVSDLW ANGDVITDAY TGNIAQVVNG EITLTPSRHS GGVLLLESEE EKARFSWDGA
TFYHIATDRF FNGNSWNDHS YGRQSTKEGF QGGDIVGLTK KLDYLAELGV DVVWISTPLE
QVHGWLPNKS GNSPEYPYAG GATLDWTQLD TNMGSEQEMR TFVDLAHQLG MRVMWSVDTA
PPTPTLSDLQ QFSIQPNNPD ALPSYWSEWQ PQEGQNLTHY LDAFKNKNGE IPDWWSEAWM
EENNENAITL PAFFANKPST KVKSSEKTKN EYLAGWMSAW VSEFGIDGFV VSNSTPELTQ
KIEQEGKDAF TLWNKDNAYK ALENASFRVI DLQQQNYFSD QMLSLKSNDE PHCLTKLNAE
YVTQSQAEKP SMTRLTWFDG KSLSDSSVGS VNADNYADYR DAATALLLSP NAVSIWYGDE
TAKMGGIYSK MNWNEIKDQR WSLQSHWKKL IEFRNNHSSI ANGEHQVIKR EPYYAFIRKN
ESDSVMVVYT GEKK
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