Gene VSAL_I2939 details

Gene Information

• Locus tag: VSAL_I2939
• ID: 6989066
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 3184346
• End bp: 3186175
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643381217
• Product: putative elongation factor Tu, GTP binding domain
• Protein accession: YP_002264267
• Protein GI: 209696336
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTACTC CACAGCTTGA TAAACTAAGA AATATCGCAA TTATTGCGCA CGTCGACCAC 
GGTAAAACAA CTTTGGTTGA TAAATTGCTC CAGCAATCAG GTACGCTTGA ATCTCGTGGT 
GAAGCTGAAG AGCGCGTCAT GGACTCGAAC GATATCGAAA AAGAACGTGG TATCACGATC 
CTTGCTAAGA ACACAGCGAT TACTTGGAAC GGTTACAACA TCAACATCGT AGATACTCCA 
GGACACGCCG ATTTCGGTGG TGAAGTTGAG CGTATTATGT CTATGGTTGA TTCGGTTCTA 
CTTATTGTAG ATGCTGTTGA CGGTCCAATG CCTCAAACGC GTTTCGTAAC GCAAAAAGCA 
TTTGCTCACG GTCTAAAACC AATCGTTGTA ATCAACAAGG TTGACCGTCC AGGCGCTCGT 
CCTGAGTGGG TTATGGATCA AGTATTTGAT TTATTCGATA ACCTAGGCGC AACTGATGAG 
CAACTAGACT TTAAAGTTGT TTATGCTTCT GCACTAAATG GTTGGGCTAA CGCTGAATCA 
GAAGAAGAAA CTGAAAACAT GGAATCTTTA TTCCAAGCGA TCGTTGACGG TGTTGATGCA 
CCTGTTGCAG ACCGTGACGG TGACTTCCAA ATGCAAATTT CTCAACTTGA TCACAACGCA 
TACGTTGGTG TTATCGGTGT TGGTCGTATT ACACGTGGTA GCGTTAAAGT TAACCAAGCG 
GTTACTGTTA TCGGTGCTGA CGGCAAAGAA CGTAAAGGCA AAATTGGTCA AGTATTAGGT 
TACTTAGGTC TTGAGCGTCA TGATGTTGAA CTTGCAGAAG CGGGTAACAT TGTTGCAATC 
AGTGGTTTAG GCGAGCTTAA AATTTCTGAT ACAGTTTGTG CGCAAAACAA TGTTGAAGCA 
TTGCCGCCAC TAACAGTTGA TGAACCAACG GTAACAATGA CTTTCCAAGT AAACAACTCA 
CCATTCTGTG GTAAAGAAGG TAAATTCGTT ACTTCACGTA ACATCCTTGA GCGTTTACAA 
AAAGAGCTAG TACACAACGT TGCACTTAAA GTTGAAGAAA CGGGTGATCC GGATAAATTT 
AAAGTATCTG GTCGTGGTGA ACTTCATCTA GGTATCTTAA TCGAAAACAT GCGTCGTGAA 
GGTTTCGAGC TAGCAGTATC TCGTCCTGAA GTTATCGAAC GTATGGTAGA TGGTCAACTA 
ATGGAACCGT TTGAAACGGT AACAATCGAT GTAGTTGAAG AGAACCAAGG CGCGGTAATG 
GAAAGTATCG GTACTCGTAA GGGTGAACTA ACTGATATGG CTCCAGATGG TAAAGGCCGT 
GTACGTATGG ACTTTATGAT GCCTTCTCGT GGTCTTATCG GTTTCCAAAC TGAATTCATG 
ACAATGACTT CTGGTTCTGG TCTTATCTAC CACTCGTTCG ATCATTACGG CCCTCACAAA 
GGCGGCACAA TTGGTCAACG TAAAAATGGT GTACTAATTT GTAACCAAGC TGGTAAAGCC 
GTTACTTACT CACTATTCTT CCTACAAGAT CGTGGTCGTT TATTCTTAGG TCACGCTACA 
GAAGTATACG AAGGTCAAAT CATCGGTATT CATAACCGTG CAAACGACCT TACCGTTAAC 
TGTATCCGTG GTAAGCAACT GACTAACGTT CGTTCTTCTG GTACTGATGA AGCACAAACG 
CTTTCTCCTT TCATCGATTT GACTCTTGAG CAAGCTCTTG AATTCATCGA CGTTGATGAG 
CTAGTAGAAG TAACACCACT AAGCATTCGT ATCCGTAAGA AACTACTTAC AGAGAACGAT 
CGTAAACGTG CTGGTCGTAC ACCTAAGTAA 

 

Protein sequence

MSTPQLDKLR NIAIIAHVDH GKTTLVDKLL QQSGTLESRG EAEERVMDSN DIEKERGITI 
LAKNTAITWN GYNINIVDTP GHADFGGEVE RIMSMVDSVL LIVDAVDGPM PQTRFVTQKA 
FAHGLKPIVV INKVDRPGAR PEWVMDQVFD LFDNLGATDE QLDFKVVYAS ALNGWANAES 
EEETENMESL FQAIVDGVDA PVADRDGDFQ MQISQLDHNA YVGVIGVGRI TRGSVKVNQA 
VTVIGADGKE RKGKIGQVLG YLGLERHDVE LAEAGNIVAI SGLGELKISD TVCAQNNVEA 
LPPLTVDEPT VTMTFQVNNS PFCGKEGKFV TSRNILERLQ KELVHNVALK VEETGDPDKF 
KVSGRGELHL GILIENMRRE GFELAVSRPE VIERMVDGQL MEPFETVTID VVEENQGAVM 
ESIGTRKGEL TDMAPDGKGR VRMDFMMPSR GLIGFQTEFM TMTSGSGLIY HSFDHYGPHK 
GGTIGQRKNG VLICNQAGKA VTYSLFFLQD RGRLFLGHAT EVYEGQIIGI HNRANDLTVN 
CIRGKQLTNV RSSGTDEAQT LSPFIDLTLE QALEFIDVDE LVEVTPLSIR IRKKLLTEND 
RKRAGRTPK