| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2530 |
|---|
| Symbol | |
|---|
| ID | 6987799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2712364 |
|---|
| End bp | 2712981 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643380794 |
|---|
| Product | sigma-E factor negative regulatory protein |
|---|
| Protein accession | YP_002263878 |
|---|
| Protein GI | 209695948 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3073] Negative regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATA AAGCAAAAAT TTCTGCTTTT ATTGATAATG AAGAAATGGA CAATGCGTTT
ATCGCTTCGT TATCAGAAAC AAGCAATGCA GAAACATGGG CAAACTATCA CTTAATTGGT
GATGTAATGA GAGGGGACGC ACCAAGTAGC AAAGAATGGA ATATTGCTGC TAATGTCGCT
CTTGCTCTTG AAGATGAGGC CGCTCATCAA ATGAATGATA ATGTGACGGC GTTTATTCCA
TCACAACCAA CGCCTTCAGA GGCAAAGAAA ACAATGCCAA GTTGGTTAAC TCAATTTAGC
CAAGTAGCAA TGGCGGCGTG TTTTTCATTA GTGGTTATTG TTGGTGTACA ACAATACAAC
AATGACGATC CTAACGGGAT CCCAACAAGC GGTGATATAC AGGTTCTTGA TACCATACCT
TTTAGTGGTT CAGCTGAGCC AGTCAGTTTA ACTCGAGACT CTCTGGTACC TAAATCATCG
AATGAAGCCG ATGTCATGGA GCAACGCAAA CGTATTAATG CAATGCTGCA AGATTATGAA
TTACAGCTTC GTTTAAATGC ACATGATGGT TCTGTTGATA GAGAACTGTT AGAGCAAAAT
TCGACGTTGG CAGAATAA
|
|---|
| Protein sequence | MTDKAKISAF IDNEEMDNAF IASLSETSNA ETWANYHLIG DVMRGDAPSS KEWNIAANVA
LALEDEAAHQ MNDNVTAFIP SQPTPSEAKK TMPSWLTQFS QVAMAACFSL VVIVGVQQYN
NDDPNGIPTS GDIQVLDTIP FSGSAEPVSL TRDSLVPKSS NEADVMEQRK RINAMLQDYE
LQLRLNAHDG SVDRELLEQN STLAE
|
|---|
| |