| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2348 |
|---|
| Symbol | |
|---|
| ID | 6987709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2521547 |
|---|
| End bp | 2522329 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 643380621 |
|---|
| Product | putative membrane associated GGDEF protein |
|---|
| Protein accession | YP_002263705 |
|---|
| Protein GI | 209695775 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAGAT TTGAAGCGGC ATTAGAGAGT CATTTATCGT ATGAAGTATT ACAACAATGG
ATAAATCATA ATAAAGAACA ACAAGCTTAC GAAGCATTGG AGTTACGTAG AAACACCCTT
GAAAATCAAA TTATTATCCA AAACTCAGAG AACAATAAAA AACAACAACA AACTGAATTA
CTAAAAACAA AGCAAAATCG TAATCTACTT TTTTTATGCT TTATCTTTTT ATTTTTATTT
ACTCTCTATA TGACGTACTC ACGAAGAAAA CTTCGTTTAC TCACAGAGAA AGATACATTA
ACAACCCTAA ATAATAGGGC TTCTATTTTT AATAAAATTA AGTCGACATT AAAAACACCT
CATTCAAAAA TGGCCTTAAT CATGCTCGAC GTTGATAATT TCAAGCAATT CAATGATGAA
CATGGACATC CAAATGGTGA CTTAGCTTTA AAGCATTTAT CAATCGTCCT ACAAAAACAC
CTCTCATTCC CTCATGAAAT CGGTCGTGTT GGGGGGGAGG AATTTATGAT TATCTTAAAA
AACCTTTCAA AATTGGAATG CTCTAGGTTA ATAAATAAAT TAAGAATTGA ACTCGAACAA
TCAACATTCA TGACGTTAGA TGTAAAAAGA TTAGCGATTA CGGCAAGCTT TTCTTGGATG
TATATTGAAG AATCAATGAC GGATATAGAC CAAATCTATT TCGTTTTAGA TGAAGGATTA
TATCAAGCTA AAGCGAATGG TCGGAATTGT ATTGTCGATG CGTTAATTGA TCCAATCACT
TAA
|
|---|
| Protein sequence | MGRFEAALES HLSYEVLQQW INHNKEQQAY EALELRRNTL ENQIIIQNSE NNKKQQQTEL
LKTKQNRNLL FLCFIFLFLF TLYMTYSRRK LRLLTEKDTL TTLNNRASIF NKIKSTLKTP
HSKMALIMLD VDNFKQFNDE HGHPNGDLAL KHLSIVLQKH LSFPHEIGRV GGEEFMIILK
NLSKLECSRL INKLRIELEQ STFMTLDVKR LAITASFSWM YIEESMTDID QIYFVLDEGL
YQAKANGRNC IVDALIDPIT
|
|---|
| |