| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2136 |
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| Symbol | nspC |
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| ID | 6987612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2287475 |
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| End bp | 2288620 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643380418 |
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| Product | carboxynorspermidine decarboxylase |
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| Protein accession | YP_002263506 |
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| Protein GI | 209695577 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0231313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAGATC AATTAAAAAA AAGTGAATTG AAAACGCCTT ATTTTATGAT TGATGAAGCG
AAGTTAATCG CGAATCTTGA AGTGGCAAAA CGATTAAAAG AACAATCAGG CGTTAAGCTT
GTGTTGGCAC TTAAATGTTT TTCAACATGG GGTGTTTTTG ATCTGATTAA ACCGTATTTA
GACGGTACAA CAAGCAGTGG ACCTTATGAA GTGAGACTGG GGCACGAAAC GTTTGGTGGT
GAGACACACG CTTACAGTGT GGGTTACAGT GAAGACGATG TGAAAGAAGT CATCGAAATT
TGTAATAAAT TGATCTTTAA TTCGCAATCT CAGTTGACTG CTTATCGACA TTTAGTTGAA
GGCAAAGTGT CTGTCGGTCT TAGGTTAAAT CCTGGTGTTA GCTATGCAGG ACAAGATCTG
GCCAATCCAG CCCGTGAGTT TTCTCGCTTA GGTGTTCAAG CGGATCGCCT TGATACCAAT
GTATTTGAGT ATATCAATGG TGTGATGTTT CACATGAATT GTGAGAATAA AAGTGTAGAC
GCATTTTCGT CACTCCTTGA TGCCATCTCA GTTCGATTTG GTACTTATTT AGATACTCTT
GAATGGGTAA GTCTGGGGGG AGGCGTTTTC TTTACATGGC CAGATTATGA TGTTGATAAG
CTCGCAACAG TATTAAAAGC TTTTTCTGAT AAACACAAAG TGCAGCTGTA TTTAGAGCCG
GGTGAGGCCA TTATTACAAA AACGGCCGAT TTGGTTGTTA GTGTGGTGGA TATTGTTGAA
AATGGTAAAA AAACAGCCAT TGTTGATTCA GCAACAGAAG CGCATCGCTT AGATACATTA
ATTTATAATG AACCCGCCTC GATACTAGAA GCCTCAGAGC AAGGTCAATA TGAATACATT
ATCGGTTCAT GTTCTTGTTT AGCGGGGGAT CAATTTTGTG AAACTCAATT TGAACAACCA
TTACAGATAG GACAAAAATT GCACTTATTA GACAGTGCAG GTTATACCAT GGTGAAATTA
AACTGGTTTA ATCGTTTAAA AATGCCATCG GTTTATTGTG AAAGACGCTC TGGAAAAATA
GATAAACTGA ACGAGTTTGA TTATTCTGAT TTTAAACGTT CGTTATCTCA GTGGACGATA
AGTTAA
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| Protein sequence | MTDQLKKSEL KTPYFMIDEA KLIANLEVAK RLKEQSGVKL VLALKCFSTW GVFDLIKPYL
DGTTSSGPYE VRLGHETFGG ETHAYSVGYS EDDVKEVIEI CNKLIFNSQS QLTAYRHLVE
GKVSVGLRLN PGVSYAGQDL ANPAREFSRL GVQADRLDTN VFEYINGVMF HMNCENKSVD
AFSSLLDAIS VRFGTYLDTL EWVSLGGGVF FTWPDYDVDK LATVLKAFSD KHKVQLYLEP
GEAIITKTAD LVVSVVDIVE NGKKTAIVDS ATEAHRLDTL IYNEPASILE ASEQGQYEYI
IGSCSCLAGD QFCETQFEQP LQIGQKLHLL DSAGYTMVKL NWFNRLKMPS VYCERRSGKI
DKLNEFDYSD FKRSLSQWTI S
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