| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2006 |
|---|
| Symbol | |
|---|
| ID | 6988393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2148040 |
|---|
| End bp | 2148921 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643380303 |
|---|
| Product | HTH-type transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002263392 |
|---|
| Protein GI | 209695463 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAG AAAGTAAATG GTTAGAAGAT TTTTTAGTAT TGGCTAAAGT TAGAAATTTT
TCACAAGCAG CCATACTTAG AAATGTAACC CAGCCGGCAT TTAGCCGTAG GATCCGTTTA
TTAGAAGAGA CAATAGGTGC TGAATTAATA AATCGAAAAA GTAAGCCTAT TGGCCTAACT
CCTAGCGGTA AGTTATTTCG AGTGACCGCT AGGACATTGG TGAATCAAAT TGTGACAGGT
ATTGACCAAA TTTCAGACTT ATCTCAACTT GGAGGGAATG TTGTTCAAGT TGCAGCGGCG
CATTCATTAG CAACCCATCT AATTCCTAAG ATTCAAAAAA TATTACCCGA AGGTAATTAC
AAACCTATAT TAAGTATTGA AGCTATTGAT GTTGACCAAG CGACTAAAGA GCTAAGAGAT
GGAGCGTGCG ACATTCTACT GGCGTTTGAT GATGATATTT TAAGGTTACC GCCATACCAA
TCATTACTAA TTGCAAAAAC AGAGCTTTTA CCTGTGAGCG CATGTGACGA TAATGGGGCT
CCTATTTATC AATTTGATAA TAAAAATGTA GTTCCATGGC TTGCTTATAG TTCTACTTCA
TATATGGGAA GACAAGTTGA AACTGTAAAA GATGAGGTTT TATTGAAACC CGTATTTTCA
TCGTCAATGA CAGATATGTT GAAGATGCTA GTACTTGATA AACAAGGCAT TGCTTGGCTT
CCTGCTTATA GTATTGAGAA GGAATTGAAA CAAAAAAAAG TTGCAATCAT TGGCGAGCAA
TCATTACGAC TTCCAATTGA ATACTATGCT TATCGCTATC AAGCGAGATT GCATCCCGCA
GGAGAGAAAG TGTGGAACAT TCTTTGCGAA ATAGAATCTT AG
|
|---|
| Protein sequence | MNIESKWLED FLVLAKVRNF SQAAILRNVT QPAFSRRIRL LEETIGAELI NRKSKPIGLT
PSGKLFRVTA RTLVNQIVTG IDQISDLSQL GGNVVQVAAA HSLATHLIPK IQKILPEGNY
KPILSIEAID VDQATKELRD GACDILLAFD DDILRLPPYQ SLLIAKTELL PVSACDDNGA
PIYQFDNKNV VPWLAYSSTS YMGRQVETVK DEVLLKPVFS SSMTDMLKML VLDKQGIAWL
PAYSIEKELK QKKVAIIGEQ SLRLPIEYYA YRYQARLHPA GEKVWNILCE IES
|
|---|
| |