Gene VSAL_I2001 details

Gene Information

• Locus tag: VSAL_I2001
• Symbol: ccmF
• ID: 6988918
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2142795
• End bp: 2144681
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380298
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_002263387
• Protein GI: 209695458
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGCTG AAATAGGTCA GTTCTGGTTA ATAGCAACGA TGGTGCTGTC TGTTGTGGGT 
GTTATTTCTA CCAGCTACGG AATCGTGAAA GGGAATATCT TGTGGCAAAT GTCGATATTG 
CCACTTTCTC TGCTCAGTTG TATTTTTTGT TTGTTGTCTA TTTCTGCATT AGGTTATGGG 
TTTTACATCG ATGATTTTTC TATTCGATAT ATTGCCGAGC ATTCTAATTC TGATTTACCT 
GTCTTTTTTA AAGTGGCCGC GATTTGGGGA GGGCATGAAG GGTCATTATT GTTCTGGGTA 
TTAACCTTAA CGTTATGGGC AGGTGTCATA ACTCTTAATC GAAAAACCAT ACAAACAGAA 
TACGTTATTC GAGTTTTGTT GGTGCTTAAT GCGTTAATTG CTATTTTTTC AGCCTTTACT 
TTATTTGCTT CAAATCCTTT CATTATTTAC GTTAACACAC CATTAGAAGG TCGAGATTTG 
AATCCAATGT TGCAAGATAT TGGATTGATA TTTCACCCAC CATTATTGTA TTTAGGCTAC 
GTCGGATTTG CCGCGACATT TTCATTTGCA CTTGCTGCGT TGATGATGAA AGACGTACCG 
CAATATTGGG TTAAACACGC AAGGCATTGG ACACTATTAG CGTGGTCATT GTTGACCGCA 
GGGATCAGTT TAGGATCGTG GTGGGCATAT TATGAGCTCG GTTGGGGCGG TTGGTGGTTT 
TGGGATCCGG TTGAAAACGC CTCTTTGTTG CCTTGGTTAA CCGCAACGGG TTTACTGCAT 
ACCTTAATCG CGAGTGATAA GAAAAACCAA CTTTTAAAAA CGTCGATGAT TCTGTCGTTA 
GTGACATTTT GTTTGAGTAT TTTAGGGACG TTTGTTGTTC GCTCTGGGGT ATTAACTTCG 
GTTCATGCCT TTGCGGTGGA CCCAACTCGT GGGATCATTC TTCTTCTGAT CTTGTTTGTG 
GTTATGCTGG CCTCTTTGTC TCTGTATGCA TTCAAAAGTA GACAGTTAAA TAGCCAACCT 
ATTCGTCATT TTATCAGTCG TGATTTTCTA TTTTTATTGC TCGCAGGTTT ATTTTCAATC 
GCAACAATCA CGGTATTACT TGGCACATTT TATCCTATGA TTTTCCAAAT TTTCGGATTA 
GGAAATATCT CCGTTGGAGC GCCTTATTTT AATCTGTTAT TTGTGCCAAT GGCGATTGTT 
GCTTTGTTCA TGATCGCCGT GTCGGTCTTT GTTCGTTGGG AAGGAAAAGC GACAAATGCA 
AATACCAAGA AGATCGTTAT TTCAAGCTTG ATTTCTATTG TGCTAGGGCT AGGAATATAT 
CGTGTTCAAT ATGAAAATAT CGCAGTAATT CCTAGCTTGG TTTGGGTGTT AGCTTTCGCT 
GTAGTAATGG GGTCTATTTG GTCGCTGATA CAGTCCAAAG GCAAAGCGAT AGGAATGGTT 
ATCGCTCATA TTGGTATTGC GATAGTGATG ATTGGTGCAG CGATGAATAG TGAACACTCT 
TTTGAAAGCA GTGCGAAAAT GGAACCGAGC ATAACCGCTA AATTAGCCGA TTATGAGATC 
ACTTATAAAG AAACCGAGCT GTTGGTTGCT TCAAATTACA CCGCAGAACA GGCAAATCTA 
TTGATACGTG AAAATGGCAA AGAAATAGCC ATGGTCCAGC CGCAGCGTCG TCATTATCAA 
GTTCGTGTAA TGAACATGAG TGAGCCTGCA ATGTATTGGT TTTGGCATGG TGACATATAC 
GTGACGTTAG GCGAAAAATT AAAAGACGGC AGTTTCGCAT TACGTTTACA ATATAAAGCG 
TATGTACGAT GGATTTGGTT TGGGTCTATT TTGATGGCGC TTGGTGGTGT ATTAGCTATG 
GTAAAAAGAA AGAGTAATTA TTCATGA 

 

Protein sequence

MVAEIGQFWL IATMVLSVVG VISTSYGIVK GNILWQMSIL PLSLLSCIFC LLSISALGYG 
FYIDDFSIRY IAEHSNSDLP VFFKVAAIWG GHEGSLLFWV LTLTLWAGVI TLNRKTIQTE 
YVIRVLLVLN ALIAIFSAFT LFASNPFIIY VNTPLEGRDL NPMLQDIGLI FHPPLLYLGY 
VGFAATFSFA LAALMMKDVP QYWVKHARHW TLLAWSLLTA GISLGSWWAY YELGWGGWWF 
WDPVENASLL PWLTATGLLH TLIASDKKNQ LLKTSMILSL VTFCLSILGT FVVRSGVLTS 
VHAFAVDPTR GIILLLILFV VMLASLSLYA FKSRQLNSQP IRHFISRDFL FLLLAGLFSI 
ATITVLLGTF YPMIFQIFGL GNISVGAPYF NLLFVPMAIV ALFMIAVSVF VRWEGKATNA 
NTKKIVISSL ISIVLGLGIY RVQYENIAVI PSLVWVLAFA VVMGSIWSLI QSKGKAIGMV 
IAHIGIAIVM IGAAMNSEHS FESSAKMEPS ITAKLADYEI TYKETELLVA SNYTAEQANL 
LIRENGKEIA MVQPQRRHYQ VRVMNMSEPA MYWFWHGDIY VTLGEKLKDG SFALRLQYKA 
YVRWIWFGSI LMALGGVLAM VKRKSNYS